Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1982 ATGGTTTCGCTTCATCCACTTGTGTGTCCTTTGTCAGTTTCCTCTTGCTCCTCTGACATTTTTAGATGCTCCCTTTGGTCTAGCTGCTACCGGTCCGCATGTTTTGCCCCAAAACGAAGAAACAGCTCCAAAACAGAGCAGCGTTCTTTCATCTGCAATGCTTCGTGGCAAGAGCTCGCCGGAGTTTTACTATTCTCAGCGATTCCTTTCACTGCCGTGAAAGCCATAGCTAATAGTCCTCTAGGAGAGTCGCTTCAGAGGAAAATGGAGGAGGAGAAGAAATCTGCTGAAAAAAAATCGTCTAAATTCAAGGCATTAGCCGACAAGGCCCGAAAGGAGAGCTGTTGGTATGGAGAAGATCGGCCTCGTTGGCTTGGTCCTATATCATATGAATACCCATCATATCTTACTGGGGACTTGCCTGGGGATTACGGCTTTGACATTGCGGGGCTAGGCAAGGATCCTGTGGCGCTGCGTAAATACTTCAATTTTGAGATATTGCATGCTCGTTGGGCTATGCTTGCATCTATTGGAGCTCTGATTCCAGAAATATTAGACCTATTGGGAGCCTTTCACTTTGTGGAACCTGTGTGGTGGCGTGTTGGTTATTCAAAGCTCAAGGGAGATACTTTGGATTACCTTGGCATCCAAGGTCTTCACTTTGCTGGAAGTCAGGGAGTGGTCGTGATTGCTATTTGCCAAGCACTCCTTATGGTTGGACCAGAATACGCTAGGTATTGTGGGACTGAGGCATTGGAGCCTCTAGGAATATATCTGCCCGGTGATATAAATTATCCTGGAGGAGCTTTGTTTGATCCCTTGAATCTGTCCAACGATCCCGAAGCTTTTGAAGAGCTGAAGGTAAAAGAAATTAAAAATGGACGTTTGGCAATGGTTGCCTGGTTAGGCTTTTACGTGCAAGCAGCACTGACGGGTAAAGGTCCAGTTCAGAACCTTATTGATTTCATTTCGGATCCTTTCCACAACAACTTTCTGAACTCCCTCAACATTATGAAATTCGTCATATGA 1029 0.4568 MVSLHPLVCPLSVSSCSSDIFRCSLWSSCYRSACFAPKRRNSSKTEQRSFICNASWQELAGVLLFSAIPFTAVKAIANSPLGESLQRKMEEEKKSAEKKSSKFKALADKARKESCWYGEDRPRWLGPISYEYPSYLTGDLPGDYGFDIAGLGKDPVALRKYFNFEILHARWAMLASIGALIPEILDLLGAFHFVEPVWWRVGYSKLKGDTLDYLGIQGLHFAGSQGVVVIAICQALLMVGPEYARYCGTEALEPLGIYLPGDINYPGGALFDPLNLSNDPEAFEELKVKEIKNGRLAMVAWLGFYVQAALTGKGPVQNLIDFISDPFHNNFLNSLNIMKFVI* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1982 342 SUPERFAMILY Chlorophyll a-b binding protein 114 334 - -
Vra6g1982 342 Coils Coil 93 113 - -
Vra6g1982 342 Pfam Chlorophyll A-B binding protein 133 308 IPR022796 -
Vra6g1982 342 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 52 331 IPR001344 GO:0009765|GO:0016020
Vra6g1982 342 Gene3D Chlorophyll a/b binding protein domain 123 334 - -
Vra6g1982 342 PANTHER CHLOROPHYLL A-B BINDING PROTEIN 7, CHLOROPLASTIC 52 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1982 Vra-Chr6 36449033 36459418 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1982 38 336 Chloroplast and Mitochondria Gene Families AT1G76570 75.585 8.10e-173 481
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1982 K14172 - gmx:100786260 558.14