Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1977 ATGCAATTAGTACTATTGTGTCTAGTGATGCTTATGCTCACTCCAGCCTTTGCAACCACCCCGAATGATGCCTATGGTGGTGATCCTGGTTGTCCATTAGGGAGTGGCATATACCGCCACACTTGCCAAGAGGCTAAGGCTATTATCTTCTATTGGGTGGAGCAGGCAGTGTCTGAAGACTCGAGAATGGGTTGTGATGCTTCAGTCTTGATGGATGACACACAGGACTTTGTTGGTGAGAAAACTGTCGGTCCAAATTTGAATTCTTTCAGAGGATTTGAAGTGATCGCAAAATCAAATCTGAGCTGGAACTACTCTATCCACAGACTGTCTCTTGTGCTGACATACTGGCAACTGCTGCAAGAGATTCAGTTCTTCTGTCGAATTACTATGTCACAGTCAGGAGGTCCAACTTGGGAGGTGCAAATGGGAAGGAAAGATAACATTACTGCTAGTAAGGATGCAGCAAATAATAACATCCCAAGTCCAAACTCCATTGTTGATGTGCTGGTAACCAAGTTCGAGAATTTAGGCCTTACACTTAAAGACATGGTTGCCCTTTCAGGGTCAGATAATGGTAACATAGTTGCACATCTTGACTTGGCTACACCTGCTACCTTTGATAACCAATACTTCGTTAATCTTCTCTCTGGGGAGGGATTGCTCCCATCAGACCAGACTCTTGTGAATGGAAATGATCAGACACGACAAATTGTGGAAAACTATGTAGAGAACCCATTAGCTTTCTTTGAAGACTTCAAGCATTCAATGTTGAAAATGGGAAACTTGGGATCACCAAGTAATGGCCAGATTCGTAGGGACTGCCGAACTGTTAACTAG 840 0.4369 MQLVLLCLVMLMLTPAFATTPNDAYGGDPGCPLGSGIYRHTCQEAKAIIFYWVEQAVSEDSRMGCDASVLMDDTQDFVGEKTVGPNLNSFRGFEVIAKSNLSWNYSIHRLSLVLTYWQLLQEIQFFCRITMSQSGGPTWEVQMGRKDNITASKDAANNNIPSPNSIVDVLVTKFENLGLTLKDMVALSGSDNGNIVAHLDLATPATFDNQYFVNLLSGEGLLPSDQTLVNGNDQTRQIVENYVENPLAFFEDFKHSMLKMGNLGSPSNGQIRRDCRTVN* 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1977 279 Pfam Peroxidase 47 244 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vra6g1977 279 Gene3D - 33 174 - -
Vra6g1977 279 PRINTS Haem peroxidase superfamily signature 135 147 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vra6g1977 279 PRINTS Haem peroxidase superfamily signature 200 215 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vra6g1977 279 ProSiteProfiles Plant heme peroxidase family profile. 64 279 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vra6g1977 279 PRINTS Plant peroxidase signature 51 71 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra6g1977 279 PRINTS Plant peroxidase signature 198 213 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra6g1977 279 PRINTS Plant peroxidase signature 214 231 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra6g1977 279 PRINTS Plant peroxidase signature 255 268 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra6g1977 279 Gene3D Peroxidase, domain 2 189 260 - -
Vra6g1977 279 SUPERFAMILY Heme-dependent peroxidases 33 279 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vra6g1977 279 PANTHER PEROXIDASE 40 10 190 - -
Vra6g1977 279 PANTHER PEROXIDASE 40 192 278 - -
Vra6g1977 279 PANTHER PEROXIDASE 72-RELATED 192 278 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra6g1977 279 PANTHER PEROXIDASE 72-RELATED 10 190 IPR000823 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1977 Vra-Chr6 36391531 36392935 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1977 36 279 Peroxidase AT4G16270 43.750 5.85e-75 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1977 K00430 - gmx:100814091 369.392