Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1962 ATGAAGCTTGGTTTCTTTCTGTTGTCTCTAGTTCTCTACCAGATGATACTAGAACCTGGGATCTTCAAAGTAGAAGGTGATGATCATGATGATGAGTTTGTGAGAGTAAGAGGGGTGCAGCTTCTCTTGAATGGGAAACCCTACTATGCTAATGGTTATAATGCTTATTGGCTCATGTACATGGCCTCTGATCCATCTCAGAGAAACAAGGTCTCATCTGCATTTCAAGTAGCTGCAAACCATGGACTTAGCATAGCAAGAACATGGGCTTTCAGTGATGCTGGAGATTACCCTCTTCAATATTCTCCTGGATCCTACAATGAAGACATGTTCCTGGGACTGGACTTTGTAATATCAGAAGCCAGAAAATATGGGACCAAGTTGGTGTTGAGTTTGGTGAATAACTATGATGACTTTGGAGGAAAGAAACAGTATGTTGAGTGGGCAAAGACTGAGGGCCAGTCCCTACATTCTGAAGATGACTTCTTCACAGACCCTCTTGTCAAGGAATTCTACAAAAACCATATCAAGAGTGTGCTCACAAGGCGTAATAACTTCACGGGAGTGGTTTACAAAGATGATCCAACCATAATGGCTTGGGAACTCATGAATGAAATTAGATGCCCTTCTGATCATTCAGGAAACACAGTTCAGGCTTGGATTACTGAAATGGCATCTTACTTGAAATCCATAGATGGAAACCATTTACTTGAAGCTGGTCTGGAGGGCTTCTATGGACTTTCAAAGAATGAGTCTAATCCAAATTTCCAAGTTGGAACAGATTTCATTGCAAACAATCAAATCCCAGCCATTGATTTTGCCACAGTTCATTCATACCCTGATCAATGGTTACCAGGATCAAGCAATGAAGAACAAACCTTGTTTTTGGTTGGATGGCTGAATGATCACATACAAGATGCACAGATTATTATTGAGAAACCAGTTTTGTTTGCTGAGTTTGGAGTATCAGTGAGAAACATGAGCAGTGAGTCAATTACAATAAGGGATGAAATTTTCAACTTGGTGTATTCTTCAATCTATTCATCAGCAAGTGATGGTGGTGCAGCAACTGGTAGCTTGTTTTGGCATCTTTTAGCAGAAGGAATGGATTCTTTTAAAGATGGCTATGAAGTCCCTTTAGATGAGAATAGCTCAACTGCTACTTTGATTGCTCAAGAGTCTCAAAAGCTAAACAGAATCAGGATGAAGAAATAA 1215 0.4008 MKLGFFLLSLVLYQMILEPGIFKVEGDDHDDEFVRVRGVQLLLNGKPYYANGYNAYWLMYMASDPSQRNKVSSAFQVAANHGLSIARTWAFSDAGDYPLQYSPGSYNEDMFLGLDFVISEARKYGTKLVLSLVNNYDDFGGKKQYVEWAKTEGQSLHSEDDFFTDPLVKEFYKNHIKSVLTRRNNFTGVVYKDDPTIMAWELMNEIRCPSDHSGNTVQAWITEMASYLKSIDGNHLLEAGLEGFYGLSKNESNPNFQVGTDFIANNQIPAIDFATVHSYPDQWLPGSSNEEQTLFLVGWLNDHIQDAQIIIEKPVLFAEFGVSVRNMSSESITIRDEIFNLVYSSIYSSASDGGAATGSLFWHLLAEGMDSFKDGYEVPLDENSSTATLIAQESQKLNRIRMKK* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1962 404 Pfam Cellulase (glycosyl hydrolase family 5) 84 328 IPR001547 GO:0004553|GO:0071704
Vra6g1962 404 SUPERFAMILY (Trans)glycosidases 33 389 IPR017853 -
Vra6g1962 404 Gene3D Glycosidases 29 401 - -
Vra6g1962 404 PANTHER MANNAN ENDO-1,4-BETA-MANNOSIDASE-LIKE PROTEIN 6 401 - -
Vra6g1962 404 PANTHER - 6 401 IPR045053 GO:0004553
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1962 Vra-Chr6 36199414 36202403 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1962 33 401 Glycoside Hydrolase AT5G66460 64.516 5.29e-176 496
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1962 K19355 - gmx:100817974 686.797
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1962 6 36199414 36202403 Vra6g1962 6 36199414 36202403 ECH