Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1953 ATGAACCAGAGATGGTCTTCTCTCGGCAAGCCCATGAACCTCCATAGACAAAAATCGATTGTTCCTCTTTCTCATCGATATAGATTCCATATCATAAATCCTCATGTCTTCCTGAAAATAGAAGTCAGAGACTTGGAGATTTTGGCTTCGCTGCAGGACGTTGTTGTTCCTAATCGAACCTTACAGAGGCTCATCCAGATCTGGTCAGACTCCCTCCACCATCCACTCCACTCCACTCACTCCCCCACATCCACCCATTCCCAATCCCTCCCCTTCAAGGACCAAATCCTTCTCGCTATCTCCGACTTGCAGACTCGCGCCAACAACCGCTTCGACTCGCTTGCCAAAATCGCTCGCTTCGCTCAAGATTCCAAAAAGAACCGCGATTTTCTCCTCAAAACGGAATGCTTCGTGCCTCTGCTCGTTGGCTTCCTCCACAATGTCAATGGTGTCGTCGAGTTCCTCGAACAGGTCGTTATGGCGTTGGATTTGGTTATCGGAAAAATGGAAGACTGTGAGGAGTTGAAAAACTTGATACTGAAGGCGCAGGGCGAGGCAGAAAAACAGAGCCTGGATTCTCTGCTCGTCGCTCTCCGACAAGGGAACCATGCTGCACAAACAGATCTAATCGAGAACTGTTTGTTGTGCCTGGTGGCTATTTCGTTTCCGAGAAGGAGCAAGATGAAGCTGGTGTGTCTGGGAGTGGTTAAGGTGTTGTCGAAGCTTCTCTGCGCTTCGAACATAACATGTATGCAGATTTGCTCAAGATACAACACAAAAATGGAGCAGAGTGTTGTTGTTGGTGATGGTCATGGTAACTTTGGAGGATTTTAA 834 0.4784 MNQRWSSLGKPMNLHRQKSIVPLSHRYRFHIINPHVFLKIEVRDLEILASLQDVVVPNRTLQRLIQIWSDSLHHPLHSTHSPTSTHSQSLPFKDQILLAISDLQTRANNRFDSLAKIARFAQDSKKNRDFLLKTECFVPLLVGFLHNVNGVVEFLEQVVMALDLVIGKMEDCEELKNLILKAQGEAEKQSLDSLLVALRQGNHAAQTDLIENCLLCLVAISFPRRSKMKLVCLGVVKVLSKLLCASNITCMQICSRYNTKMEQSVVVGDGHGNFGGF* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1953 277 PANTHER WDSAM1 PROTEIN 52 208 IPR045185 GO:0061630
Vra6g1953 277 PANTHER WDSAM1 PROTEIN 208 248 IPR045185 GO:0061630
Vra6g1953 277 Gene3D - 59 256 IPR011989 -
Vra6g1953 277 Coils Coil 172 192 - -
Vra6g1953 277 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 27-RELATED 52 208 - -
Vra6g1953 277 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 27-RELATED 208 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1953 Vra-Chr6 36126955 36127788 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1953 56 228 U-box Gene Family AT3G18710 33.714 1.07e-17 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1953 - - vra:106763783 526.554