Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1952 ATGCCATTCAGAAGCATACTGCGTGAGCTCAAGGAGATTGGAGAGGGTATCAGCAACATGTATAGAAGAGGGGGAGAGGGAAAGCATGTGCATCGCCATGGAAAATCTCACATTGCACCAGAATGTTCTCTACCACCATCCTCCTCATCATCATCCTCATCTTCTTCCTCTTCTTCCTCTTCTTCATCACAGAGCCGGTGGGCTAACTTACCACCAGAGTTGCTTTTAGACATAATTCAAAGGTTGGAAGCCAGTGAAACCTCATGGCCTGCACGTAGAGCACTTGTGGCATGTTCCTCAGTTTGTAGGCTGTGGAGAGAGATAACAAAGGATGTGGTCAAGACACCAGAACAGTGTGGTTTGCTCACTTTTCCTATATCACTGAAGCAGCCTGGCCCAAGAGACTCACCAATCCAGTGTTTTATTAGGAGAGAAAGAGTGTCTTCAACATATTGTTTATATCTCGGCCTGAGCCCTGCACTTTCTGGTGATATGAGCAAACTGTTACTGGCAGCAAAGAAGATTCGAAGGGCAACATGTACAGAATTTTTAATATCATTGGTTGCTGATGATTTCTCTCGATCAAGCAACACTTACATTGGAAAGTTGAGGTCTAATTTTCTTGGCACCAAGTTCATGATCCTGGATGGCGAGTCCCCACAGGATTCTTCACTTCCATTGAACTGCAAGTTGCAGCAAAGAGTCCATCTGAAGCAGGTACTTCCCAAGGTTGCTGCTGCTGCTGCTAACTACAAAGTAGCCACAGTATCTTATGAACTCAATGTCCTCCGAACAAGAGGTCCAAGGCGAATGCGGTGTATGATGCACTTGATACCCATATCTGCAATCCAAGAAGGAGGAAGTGCTCCAACTCCTTTGAAGTTTACAAATTATCTTAATGAGCATGTATCTACTACCACCACCACCACCTCAGACTCAAAAGGAAGGAAGCCAGAAATTGTTGAGTTTGACACAAATGACACTGAAAATACTCAAGAATCAAGCCAGAGAACAAGGGAGCCATTGGTTTTGAAAAACAAGGCCCCTAGATGGCATGAACAACTACAATGCTGGTGCTTGAATTTCAAGGGAAGGGTTACAGTGGCCTCTGTGAAGAACTTCCAGCTCGTGGCAGCTGCTGAACCATGCCAAAATGTTTCAGCTGCTGAACAAGAAAAAGTGATACTACAATTTGGAAAAATTGGGAAGGACATATTCACCATGGATTACCGATACCCCCTCTCAGCTTTTCAAGCCTTTGCAATATGTTTGAGCAGCTTTGACACAAAACCAGCTTGTGAATGA 1305 0.4444 MPFRSILRELKEIGEGISNMYRRGGEGKHVHRHGKSHIAPECSLPPSSSSSSSSSSSSSSSSSQSRWANLPPELLLDIIQRLEASETSWPARRALVACSSVCRLWREITKDVVKTPEQCGLLTFPISLKQPGPRDSPIQCFIRRERVSSTYCLYLGLSPALSGDMSKLLLAAKKIRRATCTEFLISLVADDFSRSSNTYIGKLRSNFLGTKFMILDGESPQDSSLPLNCKLQQRVHLKQVLPKVAAAAANYKVATVSYELNVLRTRGPRRMRCMMHLIPISAIQEGGSAPTPLKFTNYLNEHVSTTTTTTSDSKGRKPEIVEFDTNDTENTQESSQRTREPLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAEPCQNVSAAEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE* 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1952 434 SUPERFAMILY Tubby C-terminal domain-like 116 434 IPR025659 -
Vra6g1952 434 Gene3D Tubby Protein; Chain A 125 434 IPR025659 -
Vra6g1952 434 MobiDBLite consensus disorder prediction 325 341 - -
Vra6g1952 434 Pfam F-box domain 67 114 IPR001810 GO:0005515
Vra6g1952 434 ProSitePatterns Tub family signature 2. 419 434 IPR018066 -
Vra6g1952 434 ProSitePatterns Tub family signature 1. 362 375 IPR018066 -
Vra6g1952 434 MobiDBLite consensus disorder prediction 23 66 - -
Vra6g1952 434 PRINTS Tubby superfamily signature 183 199 IPR000007 -
Vra6g1952 434 PRINTS Tubby superfamily signature 199 223 IPR000007 -
Vra6g1952 434 PRINTS Tubby superfamily signature 250 277 IPR000007 -
Vra6g1952 434 PRINTS Tubby superfamily signature 344 361 IPR000007 -
Vra6g1952 434 PRINTS Tubby superfamily signature 362 378 IPR000007 -
Vra6g1952 434 PRINTS Tubby superfamily signature 391 410 IPR000007 -
Vra6g1952 434 PRINTS Tubby superfamily signature 412 434 IPR000007 -
Vra6g1952 434 MobiDBLite consensus disorder prediction 304 341 - -
Vra6g1952 434 Pfam Tub family 128 429 IPR000007 -
Vra6g1952 434 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 434 - -
Vra6g1952 434 PANTHER TUBBY-RELATED 1 434 - -
Vra6g1952 434 MobiDBLite consensus disorder prediction 42 66 - -
Vra6g1952 434 Gene3D - 60 113 - -
Vra6g1952 434 SUPERFAMILY F-box domain 55 111 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1952 Vra-Chr6 36118085 36121541 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1952 28 434 TUB Transcription Factor Family AT1G47270 60.488 2.86e-171 483
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Vra6g1952 Tub 2.2e-104 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1952 K19600 - gmx:100796250 751.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1952 6 36118085 36121541 Vra6g1952 6 36118085 36121541 ECH