Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1950 ATGAGTTGGAGAACTATAGCTTCCACTTCAAGACACACGTTCAAGAGACTCAATGCCATCTTCCGATCCCATTCCGCCACTTTCCCTTCTCCGCAGCACTCACGCGCCTCCTTTGCGGCCTTCCTCCACGCGCCGTTCACCACCACCACCCATCACTCCTCCCAACCCACCAACGCCCTCATCGACCCCAAAGTCCATGTGACGCAAAACGACGCCTTCGACGACAACGAAGACGCAACGAACGAGTTTCTATCGCGATTTGTGTGGATAATGCGGAAGAAGGTGAAGGAAGCGTACCCGGAATCCGACAAGGCCACCGTGGATGGCATGCTCGTGGCGATCGTGGGGAGGGTTACGGCGGAGATGGAAAAGGGCAGGGGAGTTGAAACAGCATCGTTGGGTTCGGGGGATTTCAGCGAGGATTTGTGGGGAACGGTGTGGGAGGTGAGCAATATGGTGTTGGCGGATATGGACAAGGAGAGGAAGAAGGAGAAAATGAAGGGCTTCTTGCAGTGCGAAGAGGTTAAGGAAATGTGCAGATTCGCCGGTGAAGTTGGCATTCGCGGCGATTTGCTTAGGGAGCTTAGGTTCAAGTGGGCGCGTGAGAAGATGGAGGAGCATGAGTTCTACGAGGGTTTGGAGAAAATGAGGAAGGAGGCACAGAATGAGGAGAAGGGAAGTGGTGCTGGTGAGGAGAGGAAGAAGGAGAATGTTGCTGTTGGACTTCCCAAGAGGAGAGGGAAGATAAGGTACAAGATTTATGGGCTTGATCTCTCTGATCCCAAGTGGGCTCAAGTGGCTGATAGGATCCATGAGGCAGAGCAGGTGTTTTGGCCGCAGGAGCCGAAGGCAATTACGGGGAAAGCCAAGATGGTTAGGTCGAAGATTCTGTCGTGGAAGGATGATGATGATGATGGTTTGCAAAGCCTGTTGAATGAGTTGGCGGAACTTGTTCAACCTAGCAGGGTGGAATGGACAGATTTGCTTGACAACCTGAAAGAGCAGAATCGTAGTCTGTACTCGAAGGTGGCTGAAATGTTATTAGCTGAAGATTCTTTCCAAACAGTTGTCTCTGACTACTCTAGGCTTATTGATATCTATGCTAAAGAGGACTGCTTTGATGATGTTGAGAGATTGCTGAAGAAGATGAGCGAAAATGGTATACAACTAGATGCTGCAACGGCCAGTGTGTTGGTCCACATGTACTGCAAGGTAGGCAATCATGAACGTGCAAATGAAGCATTTGAAACCTTGAAGGGACTGGGTTTCCAACCGGACTTCCAAGTCTTCAATTCAATGATCATGGCATATGTGAATAATGGCCAGCCTAATATGGGCGAGAGATTGATGAGGGAGATGGATTCAGGAAATATTAAACCCACGGAGGAAATATACATGGCATTGCTCCGATCTTTTTCTCAACAAGGTGATACTAAAGCAGCTGACCGAATTTCATTAGCTATGCAATTTGCAGGTTTCCAGCAGAGTATGGAGGCACACACCCTACTTATTGAGGCAAATGCACACATTGGTGACCCTTATCAGGCAAAAAGCCATTTTGAGTACATGATAAAACTTGGGCATAAGCCTGATGATCGCTGTGCTGCTAGTATGATTGCAGCTTATGAGAAGAAAAACTACTTGGACGATGCATTGAAGCTTCTTTTGCAGTTAGAGAGCGATGGGTTTGAGCCTGGGGTAGCCACTTATTCTGTTCTTGTGGACTGGTTGAGTAAGTTGCAGCTTGTTGATGAAGTTGAGCAGCTTTTAGGAAAAATAGCTTTGTTGGGTGAGGCTCCTCCTTTTAAGCTTCAAGTAAGTCTCTGTGATATGTATGCAAGGGTTAGAAATGAGAAGAAGGCCCTTCAAATTCTAGGTGTACTGGAATCTAGGAAGGATGAATTAGGAAAAGCTGATTTTGAGAGAATTATAAGTGGCCTTATTGATGGTGGGTTTCAGAAAGATGCGCAACGAATATGTGGGATCATGGAAGCACAGGGTTTCGATGCATCAAGGGTTAAGGTTAACCTTTTGAAGCCTGTCTCTAGAGGACCTCGTAGGAGGTGGTCATGA 2073 0.4756 MSWRTIASTSRHTFKRLNAIFRSHSATFPSPQHSRASFAAFLHAPFTTTTHHSSQPTNALIDPKVHVTQNDAFDDNEDATNEFLSRFVWIMRKKVKEAYPESDKATVDGMLVAIVGRVTAEMEKGRGVETASLGSGDFSEDLWGTVWEVSNMVLADMDKERKKEKMKGFLQCEEVKEMCRFAGEVGIRGDLLRELRFKWAREKMEEHEFYEGLEKMRKEAQNEEKGSGAGEERKKENVAVGLPKRRGKIRYKIYGLDLSDPKWAQVADRIHEAEQVFWPQEPKAITGKAKMVRSKILSWKDDDDDGLQSLLNELAELVQPSRVEWTDLLDNLKEQNRSLYSKVAEMLLAEDSFQTVVSDYSRLIDIYAKEDCFDDVERLLKKMSENGIQLDAATASVLVHMYCKVGNHERANEAFETLKGLGFQPDFQVFNSMIMAYVNNGQPNMGERLMREMDSGNIKPTEEIYMALLRSFSQQGDTKAADRISLAMQFAGFQQSMEAHTLLIEANAHIGDPYQAKSHFEYMIKLGHKPDDRCAASMIAAYEKKNYLDDALKLLLQLESDGFEPGVATYSVLVDWLSKLQLVDEVEQLLGKIALLGEAPPFKLQVSLCDMYARVRNEKKALQILGVLESRKDELGKADFERIISGLIDGGFQKDAQRICGIMEAQGFDASRVKVNLLKPVSRGPRRRWS* 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1950 690 Pfam Pentatricopeptide repeat domain 378 440 IPR002885 -
Vra6g1950 690 Gene3D Tetratricopeptide repeat domain 490 688 IPR011990 GO:0005515
Vra6g1950 690 Gene3D Tetratricopeptide repeat domain 307 416 IPR011990 GO:0005515
Vra6g1950 690 Gene3D Tetratricopeptide repeat domain 417 489 IPR011990 GO:0005515
Vra6g1950 690 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 426 460 IPR002885 -
Vra6g1950 690 Coils Coil 329 349 - -
Vra6g1950 690 Pfam PPR repeat 537 563 IPR002885 -
Vra6g1950 690 PANTHER PROTEIN NUCLEAR FUSION DEFECTIVE 5, MITOCHONDRIAL 7 683 - -
Vra6g1950 690 TIGRFAM PPR: pentatricopeptide repeat domain 429 462 IPR002885 -
Vra6g1950 690 TIGRFAM PPR: pentatricopeptide repeat domain 360 392 IPR002885 -
Vra6g1950 690 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 531 565 IPR002885 -
Vra6g1950 690 PANTHER OS07G0661900 PROTEIN 7 683 IPR044657 -
Vra6g1950 690 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 391 425 IPR002885 -
Vra6g1950 690 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 356 390 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1950 346 678 Glycosyltransferase AT1G05670 23.512 1.16e-24 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1950 - - gmx:100794017 991.875
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1950 6 36111712 36114238 Vra6g1950 6 36111712 36114238 ECH