Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1940 ATGTTTCATCGTTGGAGCAGTTCCCCTCAGCAAGACCAAGAAAGCAGCGAGCTTCATGCTGAATCAAAGATCAAGGAGCTGAAGGGTGCAATTGGACCCTTATCAGGTCATGGTTTGGTGTATTGCACTGATGCATGTTTGAAGAGATATTTGGAAGCTCGAAACTGGAATGTAGACAAGTCCAAGAAGATGTTGGGGGAGACTCTGAAGTGGAGATCAACATATAAACCAGAGGAAATTCGCTGGCAAGAGGTTGCAATGGAAGGGGAGACTGGGAAATTGTATAGAGCAAGCTTTCGTGATAGACAAGGAAGAACTGTTCTTATTCTGAGACCAGGAATGCAGAACACTACTTCAATGGAGAATCAGATGCGGCATTTTGTGTATATGTTGGAAAACGCCTTGCTTGACCTTCCACCGGGTCAAGAACAAATGGCATGGTTGATAGACTTCACTGGCTGGTCAATAACCAACAATGTGCCCTTGAAATCAGCCAGAGAGACTATCAACATTTTGCAGAATCATTACCCTGAGAGACTTGGCATAGCATTTCTTTACAACCCCCCTCGAGTTTTTGAAGCCTTTTGGAAGATAGTTAAGTACTTCTTGGATAGCAAGACATTTCAGAAGGTGAAGTTTGTGTACCCAAAGAACAAAGACAGTGTGGAGCTCATGAAGTCCTACTTTGATGAGGAAAACCTTCCCAAAGAACTAGGTGGAAAAAGCACAATGCGTTATAACCACGAGGAGTTCTCCAGATTAATGGTTCAGGATGATTTGAAATGTGCAGCAATTTGGGGGCCTGATGAGAAGCCCTCAAACCACATTGCTAATGGGCATTCTGCTGCAGCTTTCAATGAAACTTCACCTGACGCATGTTAA 882 0.4365 MFHRWSSSPQQDQESSELHAESKIKELKGAIGPLSGHGLVYCTDACLKRYLEARNWNVDKSKKMLGETLKWRSTYKPEEIRWQEVAMEGETGKLYRASFRDRQGRTVLILRPGMQNTTSMENQMRHFVYMLENALLDLPPGQEQMAWLIDFTGWSITNNVPLKSARETINILQNHYPERLGIAFLYNPPRVFEAFWKIVKYFLDSKTFQKVKFVYPKNKDSVELMKSYFDEENLPKELGGKSTMRYNHEEFSRLMVQDDLKCAAIWGPDEKPSNHIANGHSAAAFNETSPDAC* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1940 293 Pfam CRAL/TRIO domain 100 240 IPR001251 -
Vra6g1940 293 MobiDBLite consensus disorder prediction 1 20 - -
Vra6g1940 293 PANTHER GH16843P 7 279 - -
Vra6g1940 293 MobiDBLite consensus disorder prediction 1 15 - -
Vra6g1940 293 SMART CRAL_TRIO_N_2 43 68 IPR011074 -
Vra6g1940 293 Pfam CRAL/TRIO, N-terminal domain 43 65 IPR011074 -
Vra6g1940 293 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 82 246 IPR001251 -
Vra6g1940 293 SUPERFAMILY CRAL/TRIO domain 82 257 IPR036865 -
Vra6g1940 293 PANTHER CELLULAR RETINALDEHYDE BINDING/ALPHA-TOCOPHEROL TRANSPORT-RELATED 7 279 - -
Vra6g1940 293 SUPERFAMILY CRAL/TRIO N-terminal domain 21 84 IPR036273 -
Vra6g1940 293 SMART sec14_4 88 243 IPR001251 -
Vra6g1940 293 CDD SEC14 100 241 IPR001251 -
Vra6g1940 293 Gene3D - 4 266 IPR036865 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1940 Vra-Chr6 36022860 36025223 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1940 47 235 Acyl Lipid Metabolism Gene Families AT1G55840 27.962 1.47e-11 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1940 - - gmx:100790867 529.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1940 6 36022860 36025223 Vra6g1940 6 36022860 36025223 ECH