Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1920 ATGTCTCTGCTTTTCCACCTTCTCTTTCTTCTCTTCTTAGGTAATGTAGCATCTGCCACGGTATTTTCTCTCGAGAATCATTGTAGTTACACAGTTTGGCCGGGTACGCTTTCCGGCAACGGCGCCGGCATTCTCGGTAATGGCGGTTTCGCCCTGCAGCCCGGTTCGTCGGTCCATCTCACAGCTCCTTCCGGCTGGTCAGGCCGCTTCTGGGCCCGGACCGGATGCACCTTTGACGACTCCGGCGCCGGAAAATGCGCCACCGGAGACTGTGCCGGGGGACTTAAATGCACCGGCGGAGGAGTCCCGCCGGTGACGCTGGTGGAGTTCACGATCGGAAGCTCCGGCAACGGTAACAAGGACTTCTACGACGTGAGTCTCGTGGACGGTTACAACGTGGGAATGGGAGTGAGGGCTACTGGGGGAACCGGTGACTGCAAGTACGCGGGGTGCGTGGCGGACCTGAACGGCGCGTGTCCAGCGGAGCTTCAGGTTAGAGACGGGGGCGGCGCGGTGGTGGCGTGCAAGAGCGCGTGCGCGGCGTTTAACACGGCGGAGTTTTGCTGTACCGGCGAGCACGGGTCGCCGGAAACGTGTTCGCCTACACATTATTCGGAGATTTTCAAGAGTGCGTGTCCAACAGCTTACAGTTACGCATACGATGATGCTTCCAGCACTTTCACATGTTCACAATCTGATTATGTTATCACTTTCTGTTCAATGGGATCATCATCTTGA 738 0.5732 MSLLFHLLFLLFLGNVASATVFSLENHCSYTVWPGTLSGNGAGILGNGGFALQPGSSVHLTAPSGWSGRFWARTGCTFDDSGAGKCATGDCAGGLKCTGGGVPPVTLVEFTIGSSGNGNKDFYDVSLVDGYNVGMGVRATGGTGDCKYAGCVADLNGACPAELQVRDGGGAVVACKSACAAFNTAEFCCTGEHGSPETCSPTHYSEIFKSACPTAYSYAYDDASSTFTCSQSDYVITFCSMGSSS* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1920 245 PIRSF PR5 1 245 IPR001938 -
Vra6g1920 245 PANTHER OS03G0233200 PROTEIN 16 240 IPR001938 -
Vra6g1920 245 CDD TLP-PA 21 239 - -
Vra6g1920 245 SUPERFAMILY Osmotin, thaumatin-like protein 21 239 IPR037176 -
Vra6g1920 245 PANTHER PATHOGENESIS-RELATED PROTEIN 5 16 240 - -
Vra6g1920 245 Pfam Thaumatin family 26 239 IPR001938 -
Vra6g1920 245 PRINTS Pathogenesis-related protein signature 21 33 IPR001938 -
Vra6g1920 245 PRINTS Pathogenesis-related protein signature 69 80 IPR001938 -
Vra6g1920 245 PRINTS Pathogenesis-related protein signature 82 111 IPR001938 -
Vra6g1920 245 PRINTS Pathogenesis-related protein signature 230 239 IPR001938 -
Vra6g1920 245 ProSitePatterns Thaumatin family signature. 82 97 IPR017949 -
Vra6g1920 245 Gene3D Thaumatin 20 239 IPR037176 -
Vra6g1920 245 SMART tha2 22 240 IPR001938 -
Vra6g1920 245 ProSiteProfiles Thaumatin family profile. 19 239 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1920 Vra-Chr6 35817054 35818205 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1920 1 245 Receptor kinase-like Gene Family AT5G38280 45.635 9.71e-66 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1920 - - gmx:100809378 429.098