Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1914 ATGGGAAGAGCGCCATCTGAGTTTCCTTGCCTAANAGATATGGACCTAGACAGAATCAGTTACTTACCGGGTCATGTAATAGACCAAATTTTGTCACATTTGTCAATTAAGGAAGCAGTGAGAACAAGTGTTTTATCTAGCAAATGGAGGTACAGATGGGCCACGCTACCGAATCTTGTGTTCGATAACCAATTTGTCTGTGTGGCTGCTCAGGACCATATGATTGTAAAGAACAAGTTTTTGAGAACTGTTGATCATGTTCTGCTACTTCATTCCGGGCCAATTAACAAGTTCAAACTCTCCCATCGTGATCTCCTTGGTGTGATTGATATTGATCGTTGGACGCTTCATGTATCCAGAAAGGCTGTTAAAGAGTTTGTGCTGGAAATCTGGAAAGGACAGCGGTATAAGATACACTCCTGTTTATTTTGTTGTCAAAGTTTGACTCATTTAGAATTGTTTAATTGTTGGCTTAAACCTCCATCTACATTTAAAGGCTTCAAGAACTTAAAGAGTCTTGATCTGCAACACGTTACCTTGGCTCAGGATGCTTTTGAAAATTTGATATCCGGCTGTCCAATGCTTGAACGGTTGACATTGATGAACTTTGATGGTTTCACTCATCTTAATATTGATACACCGCATCTCCTGTTTTTTGACATTGGGGGTAAATTTGAAGATATTAGCTTTGAGAGTACTTTCCAATTAGCTGTGGTATCAATTGGTTTATATGTGAACTTTGAAATCAATCAAAGTAGATTTCGTGGAAACTATAGCAATTTGCTCAAATTTTTTGTTAATCTTCCGAACCTGCAAAGGCTAGAGATTCAGAGCTATTTTTTAAAGTATTTGGCAGTGGGGGTTGTGCCATTAACTCTTCCAAGACCGTGCATTGATCTAAGTTATCTTTCTATACGAATAAACTTAAATGATTTGAAGGAAATCTCAGCTGCTCTTTGCCTCCTAAGAAGCTCCCCTAATCTACAAGAACTAGAAATATTGGCTCGACAGGAGGAGCAGACTCTTATGATAACGCAAAACTATCGTTGGGAAGATGTGTTTTTTTCTTGTCCAGAAATGCATATGAGAAAAGTGAAGATAGATGGCATATCTGGTATCGAACCTGAACTGGATTTTATCAGGTTTCTACTTCTACACTGTCCTATGTTGGAAAGGATGACTGTGATTCCTGTTTCAAACATCGGAACAGAACTGATGAGACAACTGTTGCGGTGTAGGAGAGCCTCAAGACAAGCTGAAATCCTTTACCTCGACTCTTAG 1281 0.3895 MGRAPSEFPCLXDMDLDRISYLPGHVIDQILSHLSIKEAVRTSVLSSKWRYRWATLPNLVFDNQFVCVAAQDHMIVKNKFLRTVDHVLLLHSGPINKFKLSHRDLLGVIDIDRWTLHVSRKAVKEFVLEIWKGQRYKIHSCLFCCQSLTHLELFNCWLKPPSTFKGFKNLKSLDLQHVTLAQDAFENLISGCPMLERLTLMNFDGFTHLNIDTPHLLFFDIGGKFEDISFESTFQLAVVSIGLYVNFEINQSRFRGNYSNLLKFFVNLPNLQRLEIQSYFLKYLAVGVVPLTLPRPCIDLSYLSIRINLNDLKEISAALCLLRSSPNLQELEILARQEEQTLMITQNYRWEDVFFSCPEMHMRKVKIDGISGIEPELDFIRFLLLHCPMLERMTVIPVSNIGTELMRQLLRCRRASRQAEILYLDS* 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1914 426 SUPERFAMILY F-box domain 15 62 IPR036047 GO:0005515
Vra6g1914 426 Gene3D Ribonuclease Inhibitor 94 426 IPR032675 -
Vra6g1914 426 Pfam FBD 356 395 IPR006566 -
Vra6g1914 426 SUPERFAMILY RNI-like 137 333 - -
Vra6g1914 426 Pfam Leucine Rich Repeat 169 193 IPR013101 -
Vra6g1914 426 PANTHER F-BOX/RNI/FBD-LIKE DOMAIN PROTEIN 13 393 - -
Vra6g1914 426 Pfam F-box domain 20 51 IPR001810 GO:0005515
Vra6g1914 426 PANTHER F-BOX PROTEIN-LIKE 13 393 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1914 Vra-Chr6 35757040 35759716 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1914 17 216 EF-hand Containing Proteins AT5G41840 28.378 1.24e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1914 - - gmx:100782183 713.375
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1914 6 35757040 35759716 Vra6g1914 6 35757040 35759716 ECH