Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1903 ATGTTCACCAATTCACATACGCTAATGCGAACTTTGTTGTCAACTTTGCCGGAGCCAGACCTCTCCTTGAACATAAGCCCTCCCTCTATTTCGGATGTTTCTGAGGTCAAGGAAGTGGGGTGTTTCGGCAAAGTGGTTTACAGCGACATGTGTTCAACTTCTGATTCCGGGAGCAGTGGAGGAAGTGATTTGAGCCATGAGTTCCACAACCTTCGTCACCATCGTGAGCCCACGTTGAAGTTAGGCTTTGGAACAATGGATTTGAATCCTCGCCATCATCAGGTTCATGGTGACACCAGAAGCTTCACTCACCACCACCACCACCACCACCACCTTCAGCCTCACATCTACGGCCGCGATTTCAAACGAACTGCAAGAGTCGTCAATGGCGTCAAAAGAAGCGTCAGGGCTCCTCGGATGAGATGGACCACCACCCTCCATGCCCATTTTGTTCACGCGGTTCAACTTCTTGGCGGCCATGAAAGAGCAACTCCGAAGTCTGTGTTAGAGTTAATGAATGTTAAGGATCTAACCCTAGCACACGTCAAGAGTCACTTGCAGATGTATAGAACAGTGAAGAGCACTGACAAAGGCACCACAGGTCATGGGCAGACAGATATTGCAGTATTGAATCCAAGGCAAGGGATTAACATTGTTCATTTGCATTCACCTTCACCCAATTTACCAGACCCGATTCAAAGTTCCCACAGGACAGCGTGGCTACAATCATCAATAGAGACAAAAACAAAGAACAGTAGACAAGAAGCAGAGAAGGGTTTGACGTATTGTGAGGTGAAGGGAAGTGAAAGCATGGTGAAGAATGGCTTGGATTCTACCACTTTGTCACGTTCTGAGGGAATGCTTGACCTAGAATTCACCCTTGGAAGACCCATTTGGAAAAAAGACCACGCAGAATCATCCAGAGAGTTAACTCTTTTAAACTGTTGA 948 0.4694 MFTNSHTLMRTLLSTLPEPDLSLNISPPSISDVSEVKEVGCFGKVVYSDMCSTSDSGSSGGSDLSHEFHNLRHHREPTLKLGFGTMDLNPRHHQVHGDTRSFTHHHHHHHHLQPHIYGRDFKRTARVVNGVKRSVRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKSTDKGTTGHGQTDIAVLNPRQGINIVHLHSPSPNLPDPIQSSHRTAWLQSSIETKTKNSRQEAEKGLTYCEVKGSESMVKNGLDSTTLSRSEGMLDLEFTLGRPIWKKDHAESSRELTLLNC* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1903 315 MobiDBLite consensus disorder prediction 95 114 - -
Vra6g1903 315 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 1 315 IPR044847 GO:0000976|GO:0006355|GO:0010158
Vra6g1903 315 MobiDBLite consensus disorder prediction 98 114 - -
Vra6g1903 315 Gene3D - 137 194 - -
Vra6g1903 315 Pfam Myb-like DNA-binding domain 139 190 IPR001005 -
Vra6g1903 315 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 138 191 IPR006447 GO:0003677
Vra6g1903 315 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 1 315 - -
Vra6g1903 315 SUPERFAMILY Homeodomain-like 135 192 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1903 Vra-Chr6 35638416 35643218 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1903 102 206 G2-like Transcription Factor Family AT5G42630 76.415 2.38e-53 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vra6g1903 Myb_DNA-binding 1.3e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1903 - - vra:106764099 618.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1903 6 35638416 35643218 Vra6g1903 6 35638416 35643218 ECH
Vra6g1903 6 35638416 35643218 Vra5g1543 5 22039346 22044303 PCT