Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1902 ATGGGTAACGGTTGCAGATCCTGGGAGGAGGACATTTACTGGTCTCATTTTCAATTCCTCCATTTCGCGCAGTTTCTCCGCACGGGTTATGATCAACATCTTGCACTTCCGAAGACATTTTCAGACAACTTAAAGAAGAAGCCGCCTGCAAATGTGACCCTGAAGGGTCCTAGTGGTGTTGCGTGGAACGTAGGGATGATTACTAGTGGAGATACCTTGTACTTAGCTGGTGGTTGGGAGCAGTTTGTGAAAGATCACTGTTTGAAGGAGAATGATTTCCTGGTCTTTAAGTATAATGGTGAATTTCAGTTTGATGTTTTAGTGTTTGATGGGGGGAGCTTGTGTGAGAAGGCATCTTCTTATTTTGTTCGCAAATGTGGGCACGCCGAAGCTGAACATGTGGGTGGAAGTCAAAACAAGAAAAGGGACACTGCAGAAGATCCTATGAATGAAGGTCACATCCCTTTAAAAGCTGGTGTGGAATGTGCTCAACCTGGGAAATCTGTGCATGCTAATGGTACCAAGGAGCCAATTAATGTACCTTTTGAAACTCCTACTCCCAGTGAAGAAGCTTTCAATGCAGATGTTGAATCTGCTGGTGCTGAGCAAATTACATCTGATGGAGTCCCTCTGTCAGCTGTTCCCACAGAAACTGCTAATGGAAAAAGGATCAGGAAGCTTGCTTCAGTTGTTAAGCATGTGCAGACCAAACGGAGAGGCAGGGGCAGACCAGCTAAAGTGTCTACTGTTATAGAGAGAGCACTTGACTGGGTGTCTGGACTAGATGCTGAACCTGTTTCTGCTGTTAGAAGTGCGGCACAAGAGGCATTTATATCAAATAGAAGGCCTGTCACAGATGATGAGATTAAAAACGCCTTAGCATTGGCCCAGGCAGGACGTACTGATGACAGTTTGGTTGTAGTCATGCGACCCTCTCACGTGTACAAGAGATTCTTTGTGTCAATGCCCAACAAGTGGATAGGAGAACACATCCCTCCAATGTCTCAAGATGTGATCTTGCGCATGGACACGGGTGAATGGGCTGCTAGATACAGCTACCATAATATTCGTCATACTGGTGGACTTACTGGTGGGTGGAAACACTTTGTCTTGGACAACAACCTGGAAGAGTATGATGTTTGTGTCTTTAAACCAGCTGGCCAAATGAACGACAACTTGGTCCTTGATATGAGCATTTTCAGAGTTGTTGAGGAAATTGTTCCTCTTTCTGTTATGTCTCCAACAGGAAAAAGAGGAAGAAAACCAGCACAGAATAATGCTACTCTGACTGAAACATAA 1299 0.4473 MGNGCRSWEEDIYWSHFQFLHFAQFLRTGYDQHLALPKTFSDNLKKKPPANVTLKGPSGVAWNVGMITSGDTLYLAGGWEQFVKDHCLKENDFLVFKYNGEFQFDVLVFDGGSLCEKASSYFVRKCGHAEAEHVGGSQNKKRDTAEDPMNEGHIPLKAGVECAQPGKSVHANGTKEPINVPFETPTPSEEAFNADVESAGAEQITSDGVPLSAVPTETANGKRIRKLASVVKHVQTKRRGRGRPAKVSTVIERALDWVSGLDAEPVSAVRSAAQEAFISNRRPVTDDEIKNALALAQAGRTDDSLVVVMRPSHVYKRFFVSMPNKWIGEHIPPMSQDVILRMDTGEWAARYSYHNIRHTGGLTGGWKHFVLDNNLEEYDVCVFKPAGQMNDNLVLDMSIFRVVEEIVPLSVMSPTGKRGRKPAQNNATLTET* 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1902 432 Pfam B3 DNA binding domain 306 395 IPR003340 GO:0003677
Vra6g1902 432 Pfam B3 DNA binding domain 32 110 IPR003340 GO:0003677
Vra6g1902 432 SUPERFAMILY DNA-binding pseudobarrel domain 17 110 IPR015300 -
Vra6g1902 432 ProSiteProfiles B3 DNA-binding domain profile. 305 403 IPR003340 GO:0003677
Vra6g1902 432 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 261 410 - -
Vra6g1902 432 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 4 156 - -
Vra6g1902 432 CDD B3_DNA 304 401 IPR003340 GO:0003677
Vra6g1902 432 MobiDBLite consensus disorder prediction 132 153 - -
Vra6g1902 432 Gene3D - 16 115 IPR015300 -
Vra6g1902 432 ProSiteProfiles B3 DNA-binding domain profile. 19 112 IPR003340 GO:0003677
Vra6g1902 432 MobiDBLite consensus disorder prediction 413 432 - -
Vra6g1902 432 SUPERFAMILY DNA-binding pseudobarrel domain 305 389 IPR015300 -
Vra6g1902 432 SMART B3_2 22 112 IPR003340 GO:0003677
Vra6g1902 432 SMART B3_2 305 403 IPR003340 GO:0003677
Vra6g1902 432 MobiDBLite consensus disorder prediction 132 150 - -
Vra6g1902 432 CDD B3_DNA 34 110 IPR003340 GO:0003677
Vra6g1902 432 Gene3D - 284 405 IPR015300 -
Vra6g1902 432 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 4 156 IPR044837 -
Vra6g1902 432 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 261 410 IPR044837 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1902 Vra-Chr6 35622442 35625616 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1902 5 401 REM Transcription Factor Family AT4G33280 34.211 3.09e-73 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vra6g1902 B3 2.2e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1902 - - pvu:PHAVU_001G018400g 697.582