Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1849 ATGGAAGACCGAGCGCAAGATGCACTACCCCCTGGTTGCCGGTTCTACCCGTCCGAAGAGGTTCTACTCGGCTACTACTTAACCAAGAAGAACGAGAACCGGGAGCAGAGGTTCAACGGTTTTGATTTGATCAAAGAACTGAACCTGTACGATCATGACCCCTTCGAATTACCGGACGCTGCGTGCTTCCCGTACGGTTACCGGGGGAGGAAGAAGCATTGGTTCTGTTACACCGTTAAAGAGCCCAAAAGCCCAAGCAGAAAGGTCAAAAGCGGGTTCTGGCTCCGGAAGGGAAAGGTTCGGGATATTCGCGATAACGGTGGGATTGGGAACGCTGTTTTAGGCACCAGGTCCCGTTTCGTTTTCTACGCCGGGAATTCGCTGAAAAAAGCTACCAGAACGGATTGGATTTTGTACGAGTACGCATTGGTTGACCAAATTCTGGCTTCTTTTGTGCTTTGTCGTGTGGTGAATAAGCCTCATCATAAGAATAGTCCATCTGAAATTGGTCGCAGTTGTTGTGCTGAAGAGAGTGCAGCTGTGGTGGTGCGACACATCGGTGTTCAACATGATGGATGTGTTGGAGGTGATGACGTTTGTGATGATGGATTTGTTAATAGAGAGATTGAGGCCGCTGAGAATCCAATTAGGCGTGGTGGTGAACATGATCATGCTGCAACTGTTTCAGTTGCTCAGGGAAGTCAGCCGGTTCAGGAAAGGCTTTCTGGACTTCCCTGTGACGGTGCATTGTTCAATGAAGCTGTGATACCTCAGCAGCATATGCTTTCCATTCTAGAGGAGGATTTCATAGAATTGAATGATATTGTATGA 831 0.4826 MEDRAQDALPPGCRFYPSEEVLLGYYLTKKNENREQRFNGFDLIKELNLYDHDPFELPDAACFPYGYRGRKKHWFCYTVKEPKSPSRKVKSGFWLRKGKVRDIRDNGGIGNAVLGTRSRFVFYAGNSLKKATRTDWILYEYALVDQILASFVLCRVVNKPHHKNSPSEIGRSCCAEESAAVVVRHIGVQHDGCVGGDDVCDDGFVNREIEAAENPIRRGGEHDHAATVSVAQGSQPVQERLSGLPCDGALFNEAVIPQQHMLSILEEDFIELNDIV* 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1849 276 PANTHER NAC DOMAIN-CONTAINING PROTEIN 21/22-LIKE ISOFORM X1 6 276 - -
Vra6g1849 276 ProSiteProfiles NAC domain profile. 9 159 IPR003441 GO:0003677|GO:0006355
Vra6g1849 276 SUPERFAMILY NAC domain 6 159 IPR036093 GO:0003677|GO:0006355
Vra6g1849 276 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 6 276 - -
Vra6g1849 276 Pfam No apical meristem (NAM) protein 10 143 IPR003441 GO:0003677|GO:0006355
Vra6g1849 276 Gene3D NAC domain 18 164 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1849 Vra-Chr6 35096087 35099974 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1849 9 186 NAC Transcription Factor Family AT1G32510 32.474 1.45e-23 95.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vra6g1849 NAM 1.7e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1849 - - gmx:100790503 387.882