Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1813 ATGAGTTGCAACGGTTGTCGAGTGCTGCGAAAAGGTTGCAGTGAAACATGTCCTTTGAGGTCGTGTCTGCAATGGATCGAATCCGCTGAATCGCAAAGACATGCCACTCTGTTCCTTGCTAAGTTCTTTGGCCGCACCGATTTAATGTCCTTCATTGCTTCAGTTCCCCAAACCAGAAGACCTGCATTGTTTCAGTCTCTGCTGTTTGAAGGGTGCGGGCGAACGGTAAATCCGGTGAACGGTGCCGTGGGACTTCTGTGCAGCGGAAACTGGCACCTGTGTGAGGCGGCGGTGGAGACGGTGCTCGCCGGAGGGGTTCTTCGAGCGCAGCCGGATACAGTGGCCGGAGCTTCCACTGATTCGCGCCGCCCTTTCCGGCCACTAAGATTGGAACATGATGCGAGGGAGATTAATGAGAACTCATCAAGTTTGATGAACAGAGCAGAGGAACCGGAAACGGTGCGTTACGGTGGTCATAAGAAAAATCAGATCTTAAATTTGTTCGTATAA 510 0.5176 MSCNGCRVLRKGCSETCPLRSCLQWIESAESQRHATLFLAKFFGRTDLMSFIASVPQTRRPALFQSLLFEGCGRTVNPVNGAVGLLCSGNWHLCEAAVETVLAGGVLRAQPDTVAGASTDSRRPFRPLRLEHDAREINENSSSLMNRAEEPETVRYGGHKKNQILNLFV* 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1813 169 Pfam Lateral organ boundaries (LOB) domain 2 101 IPR004883 -
Vra6g1813 169 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 122 - -
Vra6g1813 169 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Vra6g1813 169 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1813 Vra-Chr6 34604230 34605861 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1813 1 118 AS2 family AT4G37540 76.271 1.68e-61 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vra6g1813 LOB 1.8e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1813 - - gmx:100796966 270.011