Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1786 ATGTTCTTCCACGAAGAAGCCCAACCGGTTCACTCCTCCTGTTTCCCGCTTCTCGAAACCATGTTCACGCCTACCGAAATAGAGGAGCTATTCTCCCTCGTTAACAAACCGCTCAGCCCGGAGTCCGGTTCGCAGGAATCGAACCGGGTGGTCAGGTCCACGCACGAGAGAAAGCTCCGGCGAATGCAGTCGAACCGGGAGTCAGCCCGACGGTCCCGGTGGAGAAAGAAGCGGCATTTAGAGAACCTCACGAACCAAGCGAACCGGCTCAGAATGGAAAACCGAGAATTAAAAAACCGGTTATGCTTAACCATGCACCAGAATCTTCTTGTCTCCTTGGAGAATGAACGTCTTAGATCCGAATCCGTGACCCTTATGGCTACACTCTCAAATCTTTATCAAATTTTAGCCACCATGATTTCACAACAGTAG 432 0.5069 MFFHEEAQPVHSSCFPLLETMFTPTEIEELFSLVNKPLSPESGSQESNRVVRSTHERKLRRMQSNRESARRSRWRKKRHLENLTNQANRLRMENRELKNRLCLTMHQNLLVSLENERLRSESVTLMATLSNLYQILATMISQQ* 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1786 143 CDD bZIP_plant_GBF1 58 107 IPR045314 GO:0003700|GO:0006355
Vra6g1786 143 PANTHER BZIP TRANSCRIPTION FACTOR 27 141 - -
Vra6g1786 143 MobiDBLite consensus disorder prediction 38 75 - -
Vra6g1786 143 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 60 75 IPR004827 GO:0003700|GO:0006355
Vra6g1786 143 Coils Coil 52 72 - -
Vra6g1786 143 Coils Coil 80 100 - -
Vra6g1786 143 Gene3D - 55 137 - -
Vra6g1786 143 PANTHER BZIP TRANSCRIPTION FACTOR 44 27 141 - -
Vra6g1786 143 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 55 101 IPR004827 GO:0003700|GO:0006355
Vra6g1786 143 SMART brlzneu 53 117 IPR004827 GO:0003700|GO:0006355
Vra6g1786 143 Pfam bZIP transcription factor 57 101 IPR004827 GO:0003700|GO:0006355
Vra6g1786 143 SUPERFAMILY Leucine zipper domain 57 108 IPR046347 GO:0003700|GO:0006355
Vra6g1786 143 MobiDBLite consensus disorder prediction 50 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1786 Vra-Chr6 34234862 34235691 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1786 12 136 bZIP Transcription Factor Family AT3G49760 37.778 2.29e-21 82.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vra6g1786 bZIP_1 3.7e-08 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1786 - - var:108337908 251.521