Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1771 ATGTTCACAACACTTCAACCTCTGCAACAATCAAAACCTTCAACACTTTCCACCTTCAGAATTCATCATACTATGAGTTTTCACGAAACACCAAACATAGGACTTGGTCTTGGTCTTGGTCTTGGCCTTGGTCTTGTTTCCTTCCATGATCAATCAGAGAACTGCATGAAGAGTGATGCCCACAACACCAGAAGGGTGGAGAATCCATCAGACTGTAACAAGACATACCCTTCACTTACTTTAGGACCACCAGAAGATGATGATCATGAAGAACTGAAAAATGATCGACCAAGTTCAAAGACAGAGTCCTATGAATATTTTCGGCCGCAGGTTTCTTCTCCCAGTGTGGTTTCTTCATTTTCCAACTCCTCTAGCATCAAGAGGGAGCGAGATCAGGCCATGGGAGAAGAATTTGATGTAGAAGTAGAGAAGGTTCAAACAAGGGTTGCAGATGCTGACGAAGATGGTAACCCCAGAAAGAAACTTAGACTCACCAAAGAACAATCAGCAATCTTGGAAGAAAACTTCAGAGAACACTCTACTCTCAATCCCAAGCAAAAGCAAGAATTAGCAATGAAGCTGAATCTGCGAACCAGACAAGTAGAGGTGTGGTTTCAGAACAGGAGAGCCAGGACAAAGCTAAAACAAACTGAGTCAGATTGTGATGTATTGAAGAAGTGTTGTGACAGTCTGACAGAAGAAAACAAGAGGTTGCAAAAGGAGGTTGAAGAACTAAAGTCAATGCAAGCAATGTCAGTGCCTCTTTACATGCAGATTCCAGCAGCCACACTTTCCCTATGCCCTTCTTGTGAGAGAATTTGTGGTAGTAAAAGTGATGATGAAAATACCAATAACAATACTTCTTCATTACTTTTTCCTTCAAAAACACATCACTTTTACAAAAGTAACTATCCTTTTTCCCACTCTTCATCTGCAGCATGCTAA 945 0.4116 MFTTLQPLQQSKPSTLSTFRIHHTMSFHETPNIGLGLGLGLGLGLVSFHDQSENCMKSDAHNTRRVENPSDCNKTYPSLTLGPPEDDDHEELKNDRPSSKTESYEYFRPQVSSPSVVSSFSNSSSIKRERDQAMGEEFDVEVEKVQTRVADADEDGNPRKKLRLTKEQSAILEENFREHSTLNPKQKQELAMKLNLRTRQVEVWFQNRRARTKLKQTESDCDVLKKCCDSLTEENKRLQKEVEELKSMQAMSVPLYMQIPAATLSLCPSCERICGSKSDDENTNNNTSSLLFPSKTHHFYKSNYPFSHSSSAAC* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1771 314 MobiDBLite consensus disorder prediction 103 128 - -
Vra6g1771 314 Gene3D - 152 221 - -
Vra6g1771 314 CDD homeodomain 158 216 IPR001356 GO:0003677
Vra6g1771 314 SMART halz 215 259 IPR003106 GO:0006355|GO:0043565
Vra6g1771 314 Pfam Homeodomain 159 213 IPR001356 GO:0003677
Vra6g1771 314 ProSitePatterns 'Homeobox' domain signature. 190 213 IPR017970 GO:0000981|GO:0006355
Vra6g1771 314 PANTHER - 21 312 - -
Vra6g1771 314 MobiDBLite consensus disorder prediction 83 102 - -
Vra6g1771 314 Coils Coil 221 251 - -
Vra6g1771 314 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 21 312 - -
Vra6g1771 314 ProSiteProfiles 'Homeobox' domain profile. 155 215 IPR001356 GO:0003677
Vra6g1771 314 SUPERFAMILY Homeodomain-like 156 223 IPR009057 -
Vra6g1771 314 MobiDBLite consensus disorder prediction 59 135 - -
Vra6g1771 314 SMART HOX_1 157 219 IPR001356 GO:0003677
Vra6g1771 314 Pfam Homeobox associated leucine zipper 215 248 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1771 Vra-Chr6 33972172 33974071 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1771 126 314 Homeobox Transcription Factor Family AT4G37790 55.276 4.71e-59 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vra6g1771 Homeodomain 3.2e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1771 K09338 - gmx:100807072 427.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1771 6 33972172 33974071 Vra6g1771 6 33972172 33974071 ECH