Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1766 ATGGGAAGAGCTCCTTGTTGTGACAAAGCCAATGTCAAAAGAGGACCATGGTCCCCCGAAGAAGATGCAACCCTCAAAACCTATCTCCAGTCTCATGGAACTGCTGGAAATTGGATTGCATTGCCCAAAAAAGCTGGCCTTAGACGGTGTGGGAAGAGTTGCCGCCTACGGTGGCTGAATTATCTGAGACCAGACATTAAACATGGAGGCTTCACTGAAGAAGAAGACAACATCATTTGCAATCTCTATGGCCAGATGGGAAGCAGATGGTCTGCCATAGCCTCTAAACTTCCTGGCAGAACCGACAATGATGTGAAAAACTACTGGAACACGAAACTGAAGAAGAAGATAATGGCAGGAAAAGTTGGTCTCAAAACATTGACTGAAAGTGACACTCTTCCTTCAACTTCAACCCCATTACCAACCAACCAAAGTCTGAATACTCAAAATTCACCTTTCAATGCTTCACCAAATCAGCTAGCCTTGGTGCTACCAATCTTAGAAGCAAATGATAACAATGCATTCACCAATAATCAAAAAAACATCATTAGTTTTGACCAAACAAAGCATCATGGGTTGTACAGTCCACAAGTCATGCATGGTGTCTCACAAATTGGTGCAAGTTCAAGGATCAACAATAACACCAAGGAAAGTAACAGTAACAGTCACATGGTGTCATTGTCTCAAGAAGGTTCAAGCAGCATTTCGGATTCATCTTCCATTGCAATGAGTTACAACAAGTGTGTTGTGTCACAGCCTCAACAGCAGCAGCAGAAAGAGCAACAACAACATTCTATTGATGAATCTATGGAAATGTTGGTGGATTTTGGCTTTGGATTTCCCTATGATTTTGCTAACTGCCATTATGAGAGAGTTGGTGAAACTTTTGCTCCAGAGTGGGTTGATTTTAGCTATGCTGACATTAAGCCACATTGA 936 0.4209 MGRAPCCDKANVKRGPWSPEEDATLKTYLQSHGTAGNWIALPKKAGLRRCGKSCRLRWLNYLRPDIKHGGFTEEEDNIICNLYGQMGSRWSAIASKLPGRTDNDVKNYWNTKLKKKIMAGKVGLKTLTESDTLPSTSTPLPTNQSLNTQNSPFNASPNQLALVLPILEANDNNAFTNNQKNIISFDQTKHHGLYSPQVMHGVSQIGASSRINNNTKESNSNSHMVSLSQEGSSSISDSSSIAMSYNKCVVSQPQQQQQKEQQQHSIDESMEMLVDFGFGFPYDFANCHYERVGETFAPEWVDFSYADIKPH* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1766 311 CDD SANT 71 113 IPR001005 -
Vra6g1766 311 Gene3D - 7 68 - -
Vra6g1766 311 SMART sant 67 115 IPR001005 -
Vra6g1766 311 SMART sant 13 64 IPR001005 -
Vra6g1766 311 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Vra6g1766 311 MobiDBLite consensus disorder prediction 130 150 - -
Vra6g1766 311 CDD SANT 16 62 IPR001005 -
Vra6g1766 311 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Vra6g1766 311 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Vra6g1766 311 PANTHER OS09G0431300 PROTEIN 1 265 - -
Vra6g1766 311 MobiDBLite consensus disorder prediction 210 238 - -
Vra6g1766 311 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Vra6g1766 311 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Vra6g1766 311 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Vra6g1766 311 PANTHER OS09G0431300 PROTEIN 1 265 - -
Vra6g1766 311 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Vra6g1766 311 Gene3D - 70 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1766 Vra-Chr6 33873192 33876076 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1766 1 118 MYB Transcription Factor Family AT5G65790 81.356 1.04e-72 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vra6g1766 Myb_DNA-binding 1.1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1766 K09422 - gmx:100789985 425.246
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1766 6 33873192 33876076 Vra6g1766 6 33873192 33876076 ECH