Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1753 ATGGGTATCTGCATATCAGTTCCAGAAAAAGATGATGATGATGAGAATGTGACAATATTTGAAGAAAGGAAGAAGGTCCTGAATGGGAGTCAGAGACTCTTCTCTGTTTACTCCAAACAGGGTACCAAAGGACTCAACCAAGATGCTGCCTCTATTCACCAGGGTTATGGAACGGAAGATGGAACATTTTGTGGTGTTTATGATGGTCATGGAGGGAATGGACACAGAGTGAGTAAAATAGTAAGCAGTCAATTATCTTCCCTCATTCTGGAACAAAAGAATGTTCTTGAAAAGATTGATGCTATAGAAAATGGTTGTCACAACACCACCCCAAAAAACCATGTTGGCACAATGAAAGAAAACTCAGATGCAAACAACTTTCAGAAATGGAAAGAAGCAATTGTTAGTGCCTTCAAGGTGATGGAGAAAGAGGTCAAGCTTCAGCATAATCTAGATTGCTCTGGCAGCGGAACCACTGCTGTAGTTATCATAAAACAGGGTGAAGGTCTTGTCATAGCAAATCTGGGTGATTCGAGAGCAGTGATGGGAACAATATGTGAAGAAAAACTCGTAGCTACCCAATTGACCACGGATTTGAAGCCCGAATTACCTCGAGAAGCAGAAAGAATAAGAAGGTGCAATGGTTGTGTGTATGCATCAAAGGAAGAACCAGAAATCCAGAGAGTGTGGATGCCCAACAATGAACACTCCCCTGGCCTAGCCATGTCTCGATCTTTTGGAGATTTCTTGCTCAAGGATTATGGTGTTATTGCTATCCCAGATATTTCTCACCACCCTTTAGCATCAAGTGATCAATTTATTGTTCTTGCTAGTGATGGGGTAGGTGATATTTGCAGAAAAGAGTGTTATGTCTGCATGCAAGATTCAAAACAAAAAGAAACAGTTAGCAGCACACTATTTATCAGAGTGTGGGATGTACTGAGTAACGATGAGGTTGCATCAATTGTGTGGAGTGCAGAGAGTGAAGAGGTTGCAGCAAGAGCAGTAGTGGAAGCAGCCACTGCTGCATGGAAAAACAAGTTTCCTTCATATATGGCAGATGACTGCACTGTGGTTTGTCTCTTCTTGCACCAGAAACCACAACTTCAGCCCTTTAAAAACTAA 1125 0.4178 MGICISVPEKDDDDENVTIFEERKKVLNGSQRLFSVYSKQGTKGLNQDAASIHQGYGTEDGTFCGVYDGHGGNGHRVSKIVSSQLSSLILEQKNVLEKIDAIENGCHNTTPKNHVGTMKENSDANNFQKWKEAIVSAFKVMEKEVKLQHNLDCSGSGTTAVVIIKQGEGLVIANLGDSRAVMGTICEEKLVATQLTTDLKPELPREAERIRRCNGCVYASKEEPEIQRVWMPNNEHSPGLAMSRSFGDFLLKDYGVIAIPDISHHPLASSDQFIVLASDGVGDICRKECYVCMQDSKQKETVSSTLFIRVWDVLSNDEVASIVWSAESEEVAARAVVEAATAAWKNKFPSYMADDCTVVCLFLHQKPQLQPFKN* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1753 374 Pfam Protein phosphatase 2C 60 293 IPR001932 -
Vra6g1753 374 ProSiteProfiles PPM-type phosphatase domain profile. 33 363 IPR001932 -
Vra6g1753 374 SMART PP2C_4 23 361 IPR001932 -
Vra6g1753 374 SUPERFAMILY PP2C-like 27 291 IPR036457 -
Vra6g1753 374 CDD PP2Cc 32 325 IPR001932 -
Vra6g1753 374 PANTHER ALPHABET, ISOFORM E-RELATED 1 300 - -
Vra6g1753 374 PANTHER ALPHABET, ISOFORM E-RELATED 310 368 - -
Vra6g1753 374 SUPERFAMILY PP2C-like 310 365 IPR036457 -
Vra6g1753 374 Gene3D - 15 366 IPR036457 -
Vra6g1753 374 PANTHER PROTEIN PHOSPHATASE 2C 72-RELATED 1 300 - -
Vra6g1753 374 PANTHER PROTEIN PHOSPHATASE 2C 72-RELATED 310 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1753 Vra-Chr6 33745390 33748537 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1753 1 368 PP2C-type Phosphatase Gene Family AT5G26010 44.474 2.22e-92 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1753 - - gmx:100815312 520.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1753 6 33745390 33748537 Vra6g1753 6 33745390 33748537 ECH
Vra6g1753 6 33745390 33748537 Vra5g1406 5 20779054 20780792 PCT