Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1749 ATGGAGAATAATATGTATAGTGCTTCACTGGACATTCCTGGCAGAAATTCTGCTGTCATAGAAGAAATTGCACAGCATTTAGCACCGAAGCCACTGATTCAATGCTACTCATTTGACCTCAATAACCAAAACCACATTATAAATGGAATTCCAGTTCTTGCTGCAGAACAAGGTGAACCTAGAAGTGATGTCCATGTAGATGGTTGCTTCATAAACCAAGCTAGAATTGCTGATTCCAATTCATTTGTCTCAATACAAGGAAAGAGTATTGTAGGAGATGCCTCGAATCCCATTAACAACAGTGCCATTCAAGAGCATTTAGCTGGAGGAAGGCCAATTGCTTCTGATGCTTCACTTGCTGATAGAATAGGCCTTCAAGAAAATCTGCAGAGTTCAGCAGCTTTGCCTCATTCAATGAGTTCATTGGAGGCACTGGGACCATACATCTTCAGTAATTGGCAAGATACGTCAAACCCTTTGGCTGCAACTTTTGGTGATCATGCCTATGATGAATTATCAAGTATTCAGAAGTGGAATGTGAACAAGTTTCTGAAAGCTCCAGAGGCCAATGGGACTGAGATCCAGGCTTATTCTTCCATAGGAAACCTGGTTCAAAATGGGTGGACATCATCAAATGTTGCAAGCTTGGGAAATTTTGCCTATAATTCTTCTAATTGCAGTAAAGAACTGTCACTAAGTCTTTCAAGATCTCCTCCAACTACTGGTCAGTGCTCAGAGATGAGCTGCTCCAACGCATCTCGCAGCATGAATGGAACAAGTTCAGGCTTGGAGCAACCTTCCTGCAGCAGCAAGGAACTGTGTATGAGATTAGGTTCCAACAAACATGTCCAGTTTTCACCAGCAATATTGGGGTCCAGATATCTTGCCGGAGTTCAAGAGATATTTGCTCAAATTGCCACATACTCATTTGAAAATGTAGAGCTGATGACTTACCCAGCTTCTGGTGTTAGAGCAGGAGGAAATAAGTCAGCTTCAGCTTTCACACCAAAGAGAAGGGTAGCGAGTAATCAGAATGAAAATTCCATGTATGGAGCACATGCAGAAGAATCTCCATCGGAAAGACATGCAGCTGATTCAAACAAATCCCAACTTCTCATGCTTCTACAACTGGTGGACAATGGATATAGCCAGTGTTTGGATGAGGTTCATACCGTGGCATCTGCATTCCATGCTGCTACTGAGTTGGATCCACACATGCATGCACATTTTGCACTTCAAACCATCTCTCTCTTGTACAAGGACTTGAGAGAGAGGATTAGCAATTGTATTCGTGCAATGGGACCAGATTTTAACAGCTTGTGTTCAGAAGAAGAGAAGGAATGGTCTCTTGAAACTTCGTTCATTCAAAAGCAATGGGCTCTGCAGCAGTTGAAGAAAAAAGATCAGTTATGGAGACCCCAAAGGGGATTGCCAGAGAGATCTGTCTCAGTTCTACGCGCTTGGATGTTTCAGAATTTCCTCCATCCGTATCCTAAAGATGCAGAGAAGCATTCATTGGCAGTAAAAAGTGGGTTGACAAGAAGCCAGGTATCGAATTGGTTTATCAATGCACGTGTTCGATTATGGAAGCCTATGATAGAAGAAATGTATGCTGAAATGAGTAGAAGAAAAGCTTGTAGAAATGAAGAAGGATTGGAGAGCAGTCACAGAAGCAGGATGAGCATGAACAGTCAAATGTTGAATATCAATTGA 1713 0.4209 MENNMYSASLDIPGRNSAVIEEIAQHLAPKPLIQCYSFDLNNQNHIINGIPVLAAEQGEPRSDVHVDGCFINQARIADSNSFVSIQGKSIVGDASNPINNSAIQEHLAGGRPIASDASLADRIGLQENLQSSAALPHSMSSLEALGPYIFSNWQDTSNPLAATFGDHAYDELSSIQKWNVNKFLKAPEANGTEIQAYSSIGNLVQNGWTSSNVASLGNFAYNSSNCSKELSLSLSRSPPTTGQCSEMSCSNASRSMNGTSSGLEQPSCSSKELCMRLGSNKHVQFSPAILGSRYLAGVQEIFAQIATYSFENVELMTYPASGVRAGGNKSASAFTPKRRVASNQNENSMYGAHAEESPSERHAADSNKSQLLMLLQLVDNGYSQCLDEVHTVASAFHAATELDPHMHAHFALQTISLLYKDLRERISNCIRAMGPDFNSLCSEEEKEWSLETSFIQKQWALQQLKKKDQLWRPQRGLPERSVSVLRAWMFQNFLHPYPKDAEKHSLAVKSGLTRSQVSNWFINARVRLWKPMIEEMYAEMSRRKACRNEEGLESSHRSRMSMNSQMLNIN* 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1749 570 MobiDBLite consensus disorder prediction 335 352 - -
Vra6g1749 570 Pfam Associated with HOX 289 427 IPR006563 -
Vra6g1749 570 Gene3D - 474 553 - -
Vra6g1749 570 SMART prehox3 283 428 IPR006563 -
Vra6g1749 570 SUPERFAMILY Homeodomain-like 473 540 IPR009057 -
Vra6g1749 570 ProSiteProfiles 'Homeobox' domain profile. 468 531 IPR001356 GO:0003677
Vra6g1749 570 MobiDBLite consensus disorder prediction 327 365 - -
Vra6g1749 570 SMART HOX_1 471 535 IPR001356 GO:0003677
Vra6g1749 570 MobiDBLite consensus disorder prediction 237 264 - -
Vra6g1749 570 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 11 566 - -
Vra6g1749 570 CDD homeodomain 471 532 IPR001356 GO:0003677
Vra6g1749 570 Pfam Homeobox KN domain 488 527 IPR008422 GO:0003677|GO:0006355
Vra6g1749 570 MobiDBLite consensus disorder prediction 548 570 - -
Vra6g1749 570 PANTHER HOMEOBOX PROTEIN ATH1 11 566 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1749 Vra-Chr6 33719011 33722856 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1749 188 544 Homeobox Transcription Factor Family AT4G32980 49.587 1.84e-98 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Vra6g1749 POX 2.7e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1749 - - gmx:100812648 941.414
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1749 6 33719011 33722856 Vra6g1749 6 33719011 33722856 ECH
Vra6g1749 6 33719011 33722856 Vra5g1400 5 20730949 20734488 PCT