Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1732 ATGATAACTCTCTTTCTCATTCATTGTTTCATTCCCCATTTCTCACTTCTTCTTCTTCTTCCTTCCCTATCCCTCTGTACTCTCCATTGTCCATTACTTTTGCATACTTCACATCAAACTTTTCTCTCTCTCTTTCTCTCCATATCCATGACTCCTTATTCCCTCCACTCACCATCTCCTTCCTTACAACCTCAAACCCAAATCTTCATTTCTTCTAATAATCAGGATTGCCCTACCTTCTTCAACATCTTTGATCCAAGGAAAACCATAGAAATTGGAGCCTTCACACAAACTTATCAACAGGATGAGAAGATGGTATTGCATGATGGATCATCAAGCAACAATCTGAATTCACCTGAGCCAGTTACGGTTGATCCAATTAGCAGGAGAAATGAGGGTAATTTAGGGTCGTACAAAATGGACGATGAAGACATAAAACACAGTCATGGGTCTGGGAAATGGATGTCTTCAAAGATGAGGTTAATGAAAAAGATGATGAGAAGGAGCATGAGTCCAACCTCTGACAGATTGAATCCACAAGGGCAAGAAATCAGATACAGCCAAAGAAGCCCTCGCAACACCAGCAGTAGCACCACTAGGGTTTGTTCGGACTGTAACACAAGCACTACCCCACTTTGGAGGAGTGGCCCTAAGGGTCCTAAGTCGCTTTGCAATGCCTGTGGAATTAGACAGAGGAAGGCAAGAAGGGCAATGGCTGAAGCTTCAAATGGTTTGGTCACTCCCATAAACTCAGTATATGCAAAGACCAGAGTGTACAACAAGGAGAAAAAGTCTCGTGGAAACCATTTTGCACAGTTCAAGAACAAGTACAAGTCCAGTACTACTACTACTACTACTACTATTGCTTCTGCAGGCTCATCTGAGGGGCTGAGAAAGATTGAATATTTGAAGGATTTTGCCATAAGTTTGAGCAGTAAAAACTCATCTTTCCAACAAAAAGTGTTTCCACGGGATGAAGTAGCTGAGGCAGCAATGCTTCTGATGGAGTTATCCTGTGGTTTTGTCCATTGA 1032 0.4215 MITLFLIHCFIPHFSLLLLLPSLSLCTLHCPLLLHTSHQTFLSLFLSISMTPYSLHSPSPSLQPQTQIFISSNNQDCPTFFNIFDPRKTIEIGAFTQTYQQDEKMVLHDGSSSNNLNSPEPVTVDPISRRNEGNLGSYKMDDEDIKHSHGSGKWMSSKMRLMKKMMRRSMSPTSDRLNPQGQEIRYSQRSPRNTSSSTTRVCSDCNTSTTPLWRSGPKGPKSLCNACGIRQRKARRAMAEASNGLVTPINSVYAKTRVYNKEKKSRGNHFAQFKNKYKSSTTTTTTTIASAGSSEGLRKIEYLKDFAISLSSKNSSFQQKVFPRDEVAEAAMLLMELSCGFVH* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1732 343 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 66 343 - -
Vra6g1732 343 SMART GATA_3 196 247 IPR000679 GO:0006355|GO:0043565
Vra6g1732 343 MobiDBLite consensus disorder prediction 109 155 - -
Vra6g1732 343 Gene3D - 192 269 IPR013088 GO:0006355|GO:0008270
Vra6g1732 343 ProSiteProfiles GATA-type zinc finger domain profile. 196 232 IPR000679 GO:0006355|GO:0043565
Vra6g1732 343 MobiDBLite consensus disorder prediction 168 219 - -
Vra6g1732 343 CDD ZnF_GATA 201 238 IPR000679 GO:0006355|GO:0043565
Vra6g1732 343 MobiDBLite consensus disorder prediction 109 124 - -
Vra6g1732 343 MobiDBLite consensus disorder prediction 135 151 - -
Vra6g1732 343 Pfam GATA zinc finger 202 235 IPR000679 GO:0006355|GO:0043565
Vra6g1732 343 MobiDBLite consensus disorder prediction 171 215 - -
Vra6g1732 343 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 196 236 - -
Vra6g1732 343 ProSitePatterns GATA-type zinc finger domain. 202 227 IPR000679 GO:0006355|GO:0043565
Vra6g1732 343 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 66 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1732 Vra-Chr6 33558515 33560594 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1732 153 343 C2C2-Gata Transcription Factor Family AT4G26150 41.827 7.45e-28 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vra6g1732 GATA 3.3e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1732 - - vra:106764137 617.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1732 6 33558515 33560594 Vra5g1394 5 20694424 20695656 PCT