Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1722 ATGTCTAATTTGACTTCTGCATCGAGTGAAATAAGTGCTTCTTCAGGAATCAGAAATGACAGTGGTTTTTTCCATGCTCACCAATACTCCTCTACTTCAATAAATCAAGAACCACAACCAAAAAAGAAGAGAAGTCTTCCAGGCCATCCAGACCCTGATGCAGAAGTGATAGCATTGACTCCAGAGACCCTATTGGCAACAAACAGGTTTGTGTGTGAGATTTGTCAGAAAGGGTTTCAAAGGGATCAGAATCTGCAGCTTCATAGAAGAGGGCACAATCTGCCATGGAAGCTAAAGAAGAAGAACAGCAAAGAGGTGAGAAAGAAAGTGTATGTTTGTCCAGAGGCAACATGTGTTCACCATGACCCTTCAAGGGCCCTTGGGGACCTCACTGGAATCAAGAAGCACTTTTTCAGGAAGCATGGAGAGAAGAAATGGAAGTGTGAGAAGTGCTCCAAACGCTATGCAGTTCAATCTGATTGGAAAGCTCACTCCAAAATCTGTGGCACCAGGGAATACAAATGTGACTGTGGTACCCTTTTCTCTAGAAGAGACAGCTTTATCACTCACAGAGCCTTCTGTGATGCCTTAGCACAAGAAAGTGGAAGAGCAGTGAACCCTCACTCTCTATTATCATCTCAGTCCCAATTTCGAAGCCATGGGCTTCAACTTGAAGCAGCATCATCAATGGTGATGAAAAGAGAACAAGATTTCAACCTATTAGGTCAAGAAATTCCATCATGGTTATCTTCTCCAACAGTGTTGGAAGAATCAATGCACAGTCAAACACTGAGAACCACCTTAGACTTCTCAGCAACACAGTTGTTTCCCACACATGCGAACCACTCATTGTTCCACCATGATCATCATCAAAACCCTAGCCCTACTACTACTACTACTACTTCTACAACAACAGCTTCAACACCCACTTTTCTTCCTTCTTTGAGTTCCTTCCATTATTCCACAACTTCTCCTCACATGTCAGCCACTGCTTTGTTGCAAAAAGCCTCACAAATTGGCGTAACAGTGAGTGCAGCACCTTCACAAGCGATGATAGTGAGACCCCACTTAGGCAAACAACAACAAACCTTCAGGGACTTCACCGTCCTGAGTAGCAACACAACTTCAAGGGACTTGACTGCCCTGAACATAAGGGAGGCCTTCAGAACAGAGAAAAAGATAGCGGAAGCAATAAAGGTAGGACTAGGTGTTGGTGCATTGGTGGCACAAGTGGCGAAGACGATGGCCGCGAAAGTGATCGGCGACGGTGGCCGACAACGGTGGCCGGAGATGGTGGCTGGATGGCAACACCGGACAGATGCGAAACAAAAACCAGAGACTGCGCATTGA 1350 0.4541 MSNLTSASSEISASSGIRNDSGFFHAHQYSSTSINQEPQPKKKRSLPGHPDPDAEVIALTPETLLATNRFVCEICQKGFQRDQNLQLHRRGHNLPWKLKKKNSKEVRKKVYVCPEATCVHHDPSRALGDLTGIKKHFFRKHGEKKWKCEKCSKRYAVQSDWKAHSKICGTREYKCDCGTLFSRRDSFITHRAFCDALAQESGRAVNPHSLLSSQSQFRSHGLQLEAASSMVMKREQDFNLLGQEIPSWLSSPTVLEESMHSQTLRTTLDFSATQLFPTHANHSLFHHDHHQNPSPTTTTTTSTTTASTPTFLPSLSSFHYSTTSPHMSATALLQKASQIGVTVSAAPSQAMIVRPHLGKQQQTFRDFTVLSSNTTSRDLTALNIREAFRTEKKIAEAIKVGLGVGALVAQVAKTMAAKVIGDGGRQRWPEMVAGWQHRTDAKQKPETAH* 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1722 449 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 3 374 - -
Vra6g1722 449 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 3 374 - -
Vra6g1722 449 MobiDBLite consensus disorder prediction 290 308 - -
Vra6g1722 449 ProSitePatterns Zinc finger C2H2 type domain signature. 72 92 IPR013087 -
Vra6g1722 449 MobiDBLite consensus disorder prediction 284 308 - -
Vra6g1722 449 MobiDBLite consensus disorder prediction 30 54 - -
Vra6g1722 449 ProSiteProfiles Zinc finger C2H2 type domain profile. 70 92 IPR013087 -
Vra6g1722 449 SUPERFAMILY beta-beta-alpha zinc fingers 69 166 IPR036236 -
Vra6g1722 449 Gene3D Classic Zinc Finger 69 93 - -
Vra6g1722 449 Gene3D Classic Zinc Finger 105 194 - -
Vra6g1722 449 SMART c2h2final6 146 166 IPR013087 -
Vra6g1722 449 SMART c2h2final6 70 92 IPR013087 -
Vra6g1722 449 SMART c2h2final6 111 141 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1722 Vra-Chr6 33432054 33443988 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1722 31 346 IDZ Gene Family AT3G50700 54.192 3.57e-115 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vra6g1722 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1722 K25870 - gmx:100783557 516.153