Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1717 ATGGAGGGAATTGTGGTGAAGGAGGAAGAAACAGTGACGGGTGGTGGTGGTGGTGGTGGTGGTGGTTCATCATCATCATCTTCTTCTTTGAGCTTTACTCCACAACCAATGGAAGGGTTGAACGAAGTGGGTACACCACCCTTTTTGACAAAGATCTATGACATGGTCGAAGATCATTCCACAGATTCTGTTGTGTCTTGGAGCACTTCTTGCAATAGCTTTGTTGTGTGGGATTCTCACAAGTTTTCTACTAACATTCTTCCTCGTTACTTCAAGCACAACAATTTCTCCAGCTTCATTCGCCAGCTCAACACCTATGGCTTTAGGAAAGTTGATCCTGATAGATGGGAGTTTGCAAATGAAGGATTTTTGGCAGGACAGAGGCACTTATTGAAGAACATAAAGAGAAGAAGAAGAGTGTCACAGAGCATGCAAGAAAGAGGAGTAGGAGGAGCATGTGTTGAAGTGGGGGAGTTTGGACTAGAAGGTGAGTTGGAGAGGTTGAAAAGAGATAGGAACATTCTGATGGCAGAAATTGTGAGGTTGAGGCACCAACAGCTGAACTCAAGAGACCAATTGAGTGCCATGGAAACCAGATTGCAAACCATAGAGAAGAAACAACAAAAGATGACCATATTCCTTGCCAAAGCACTAAAAAATCCATCTTTCATGCAACAATTAGCCCACAAGACCCCCCAAAGTAGAGAAATCTTGGATGCTGAAATCAATAGGAAAAGGAGACTAATTGCTGCCCAGAGTTTGGAGAATCTGCAACAAGATGATCCTGTAACATTGATGGACTATTCAAACCAACAAGATTTGGCAACTATGGAGCCTGAGATTAACACTTTTTTCTCACCAGCTTTTGATAGTGAACTTGGTCATGAAATCAATGAGTCTGCACTAGATTCTGATATAGCAGCTAGTCAGAGTTATTTTGGAGATACAATATTGGAGGACTTGCTCATTGAAGACTTGGTCACTGGGGATCCAAAGGATGAAGTTATCATTGGTGATTGTTCCCAGATTGATGTTCCAGTGGAGGATTTGGTAGCAGACCCTGATGATTGGAATCATATGGACCATTCAGGATCAAAACCATAG 1104 0.4239 MEGIVVKEEETVTGGGGGGGGGSSSSSSSLSFTPQPMEGLNEVGTPPFLTKIYDMVEDHSTDSVVSWSTSCNSFVVWDSHKFSTNILPRYFKHNNFSSFIRQLNTYGFRKVDPDRWEFANEGFLAGQRHLLKNIKRRRRVSQSMQERGVGGACVEVGEFGLEGELERLKRDRNILMAEIVRLRHQQLNSRDQLSAMETRLQTIEKKQQKMTIFLAKALKNPSFMQQLAHKTPQSREILDAEINRKRRLIAAQSLENLQQDDPVTLMDYSNQQDLATMEPEINTFFSPAFDSELGHEINESALDSDIAASQSYFGDTILEDLLIEDLVTGDPKDEVIIGDCSQIDVPVEDLVADPDDWNHMDHSGSKP* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1717 367 MobiDBLite consensus disorder prediction 1 40 - -
Vra6g1717 367 ProSitePatterns HSF-type DNA-binding domain signature. 87 111 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra6g1717 367 PRINTS Heat shock factor (HSF) domain signature 48 71 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra6g1717 367 PRINTS Heat shock factor (HSF) domain signature 86 98 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra6g1717 367 PRINTS Heat shock factor (HSF) domain signature 99 111 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra6g1717 367 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-6B 26 333 - -
Vra6g1717 367 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 26 333 IPR027725 -
Vra6g1717 367 Gene3D - 41 138 IPR036388 -
Vra6g1717 367 Pfam HSF-type DNA-binding 48 137 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra6g1717 367 Coils Coil 165 185 - -
Vra6g1717 367 SUPERFAMILY "Winged helix" DNA-binding domain 45 137 IPR036390 -
Vra6g1717 367 SMART hsfneu3 44 137 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra6g1717 367 MobiDBLite consensus disorder prediction 18 38 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1717 Vra-Chr6 33371292 33374442 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1717 34 361 HSF AT2G26150 50.760 6.48e-113 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vra6g1717 HSF_DNA-bind 2e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1717 K09419 - gmx:100778558 477.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1717 6 33371292 33374442 Vra5g1388 5 20627791 20629847 PCT