Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1715 ATGGGTGCATCTGGAAAATGGGTGAAGGCGTTGATCGGACTCAACAGCAAGAATGAACTTGGAGGGAAGAAGAAGAAGTGGAGGCTGTGGAAGAGTTCTTCTGCAGGGGAGAACAGATCTCAAGACTTCGAGTATTGCAGTGTGGCTTCGGATTCCTTCACCGCTGCAGTGGCCACAGTTGTCAGAGCTCCACCTAAGGATTTCAAACTCCTCAAGCAAGAATGGGCTGCCACCCGAGTTCAAACTGCTTTCCGTGCCTTCTTGGCAAGAAGGGCATTGAGGGCGTTGAAGGGAGTGGTGAGGCTTCAAGCTCTTGTAAGGGGTAGACTTGTGAGGAAGCAGGCTGCAGTCACACTGAGGTGCATGCAGGCCTTGGTTCGTGTCCAGGCACGTGTGAGGGCACGGCGCGTGCGAATGTCCATGGAGGGGCAAGCAGTGCAAAACATGCTAAATGAACGCCGCACCAAGGCTGAACTCAACAAGGAAGCAGAGGATGGTTGGTGTGATAGCAAAGGATCATTGGAAGATGTCAAGACAAAACTACAAATGAGGCAAGAGGGAGCTTTCAAGAGGGAGAGAGCAATTGCATACTCTCTTGCCCAAAAGCAATGGAGATCAACCCCCATTTCAAATTCAAGAGCAAACACCTCTTCGAACAAGCAAGAGATAGACAAGGCTAACTGGGGATGGAGTTGGTTGGAACGTTGGATGGCAGCAAAGCCGTGGGAGAGTAGATTGATGGAACAAACTCGTCATCATGCTGATGCCACAGAGAAAACTCCTCCTCCTCCTCCAAAGAAAGGCGTGGACCCCACAAATTCAAAAAATATTTCAGAACCATGCAGTGTCAAAGTCAGAAAGAACAATGTCACCACAAGGATTTCAGCTAGACCTCCTCATGTTGGCCAAGCCACTCGTTTGTCCTCTAGTCCTAGTTCTGAGTTTCACTACGATGAGAGCTCTAATTCATCTTCAATATGCACATCCATGACACCAATATCTGGGAGTGTTTCTTTGCCTTGTGAGAGGACAGAGGATAGTAACAACAATACTACTAGGCCTAGTTATATGAACCTGACCGAGTCAACCAAGGCAAAGCAGAAAACCAGCAGTCATCAATACAACAGATCCCAGAGGCAACAGTCCATGGATGAGTTCCAGTTTCTCAAAAGAACAGCGGTTTTCTCAAATGGAGATGCCAAAAGCACTGGTGCTTCTGACCCTTCAACCAACTTTTCTAGGCCACTTTACCTACCCTCCTACATGGATAAGAAGCCGCGGTGA 1284 0.4836 MGASGKWVKALIGLNSKNELGGKKKKWRLWKSSSAGENRSQDFEYCSVASDSFTAAVATVVRAPPKDFKLLKQEWAATRVQTAFRAFLARRALRALKGVVRLQALVRGRLVRKQAAVTLRCMQALVRVQARVRARRVRMSMEGQAVQNMLNERRTKAELNKEAEDGWCDSKGSLEDVKTKLQMRQEGAFKRERAIAYSLAQKQWRSTPISNSRANTSSNKQEIDKANWGWSWLERWMAAKPWESRLMEQTRHHADATEKTPPPPPKKGVDPTNSKNISEPCSVKVRKNNVTTRISARPPHVGQATRLSSSPSSEFHYDESSNSSSICTSMTPISGSVSLPCERTEDSNNNTTRPSYMNLTESTKAKQKTSSHQYNRSQRQQSMDEFQFLKRTAVFSNGDAKSTGASDPSTNFSRPLYLPSYMDKKPR* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1715 427 MobiDBLite consensus disorder prediction 397 427 - -
Vra6g1715 427 MobiDBLite consensus disorder prediction 397 416 - -
Vra6g1715 427 ProSiteProfiles IQ motif profile. 73 101 IPR000048 GO:0005515
Vra6g1715 427 MobiDBLite consensus disorder prediction 249 385 - -
Vra6g1715 427 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 1 425 - -
Vra6g1715 427 Pfam Protein of unknown function (DUF4005) 322 404 IPR025064 -
Vra6g1715 427 ProSiteProfiles IQ motif profile. 97 124 IPR000048 GO:0005515
Vra6g1715 427 MobiDBLite consensus disorder prediction 271 385 - -
Vra6g1715 427 PANTHER IQ-DOMAIN 5-RELATED 1 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1715 Vra-Chr6 33354884 33357829 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1715 1 427 IQD Protein Family AT2G26180 58.465 1.24e-140 406
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1715 - - gmx:100787102 673.315
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1715 6 33354884 33357829 Vra5g1386 5 20614561 20616989 PCT