Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1708 ATGAATCTGCTCCACGGCTCCAAGGTTTGGGTCGAGGACCGGGATTCTGCCTGGCTGCCAGCTGAAGTGCTCGATTCTGACGGTAACAAGATTCTGCTACTAACTGATTCCGGCAAGAAGGTGTTTGCTTCCAAGGAGAAACTGTTCCCGAGGGATGCTGACGAAGAGGAGCATGGCGGATTCGAAGACATGACGCGGTTGGCGTACTTGAACGAGCCTGGAGTGATGTTCAATCTTCGAAGAAGATACGCGCTCAATGACATCTATACATATACAGGCAGCATTTTAATAGCCGTTAATCCGTTCACAAAGCTTCCACATTTATATGATTCCCATATGATGGAGCAATATAAGGGAGCTCCATTGGGTCAGCTTAGCCCACATGTTTTTGCTGTCGCTGATGCATCATACAGAGCAATGATGAATGAAGGTAAAAGTCAATCTATCTTGGTTAGCGGCGAAAGTGGTGCTGGAAAAACTGAGACAACAAAATTGATCATGCAGTATCTTACCTTTGTTGGTGGACGTGCTGCTGGTGATGATAGAACAGTTGAACAACAAGTTCTTGAATCCAATCCACTTCTAGAGGCGTTTGGTAATGCAAGAACTGTTAGGAATGACAATTCGAGTCGTTTTGGGAAGTTTGTTGAAATTCAGTTTGATTCAAATGGTAGAATATCTGGTGCTGCAATTAGAACTTACTTACTGGAAAGATCACGAGTAGTGCAGATAACGGATCCAGAGAGAAATTATCACTGCTTTTATCAGTTGTGTTCATTTGAAAGGGATGCAGAGAAGTATAAGTTAGGACATCCGAGTCACTTCCACTATCTAAATCAAAGTAAAATCTATGAATTAGATGGTGTAAGCAACTCAGAAGAATACCTCAAGACAAGGAGAGCAATGGATATTGTTGGCATTAGTCACCAGGATCAGGAAGCCATATTTCGTGTCTTAGCAGCAATTTTACATTTGGGAAACATTGAATTTTCTCCTGGAAAAGAGCATGACTCATCGGCAGTCAAGAATGACAAATCAAGATTTCATATGCAGATGGCTTCTGATCTTTTCATGTGTGATGTAGACCTACTGTTGGCAACATTATGTACTCGTTCAATACAAACTCGTGAAGGAAGTATTGTCAAGGCCCTTGATTGCAATGCTGCTGTTGCTGGCCGTGATGCTTTGGCGAAAACTGTTTACGCTCGTTTATTTGATTGGCTTGTTGATAAGATCAATATGTCTGTTGGGCAAGACATCAATTCCAAGATGCAAATTGGAGTTTTGGATATTTATGGTTTTGAGTGCTTTAAGGATAATAGTTTTGAGCAATTTTGCATCAATTTTGCAAATGAAAAGCTTCAGCAACATTTTAATGAGCATGTGTTCAAGATGGAACAGGATGAGTATGGCAAAGAAGAAATTAACTGGAGTTACATTGAATTTGTAGATAACAAAGATGTTTTAGATTTAATTGAAAAGAAACCCATTGGTATTATTGCTCTGTTGGATGAAGCTTGTATGTTTCCAAAGTCGACTCATGAAACATTCTCAACCAAGTTGTTTCAGCATTTCCGATCTCACCCTAGATTGGGAAAAGAAAAGTTTTCACAAACAGATTTTACTATTTCTCATTATGCTGGAAAGGTCACGTATCATACAGATACATTTTTAGACAAAAATCGTGATTATGTTGTAGTAGAACATTGCAATCTCTTATCTTCTTCAAAATGCCCTTTTGTTTCTGGTCTATTTCCTTTGCTATCTGAAGAATCTTCAAGATCATCATACAAGTTTTCTTCAGTGGCTGCTAGATTTAAGCAACAACTTCAAGCACTCATGGAGACCCTAAACTCAACAGAGCCTCACTACATACGATGTGTGAAACCAAATTCTTTGAATCGACCGCAACAATTTGAAAATGCAAGTGTCATCCACCAGTTACGCTGTGGGGGTGTCCTTGAGGCTGTTCGGATAAGTCTGGCAGGTTATCCCACTCGAAGAACTTATTCAGAGTTTGTGGATCGTTTTGGGTTGATAGCTTCTGAATTTATGGATGGAAGTTATGATGATAAATCTGCAACTGAGAAAATTTTGCAAAAGCTTAAGCTTGAGAATTTTCAGTTGGGTAGGACCAAAGTATTTCTCAGAGCTGGGCAAATTGGTATTTTAGACCAGAGACGTGCTGAGGTTTTAGACAATGCTGCAAAGTGTATCCAGCGCCGCATGAGGACATTTATTACACATCAGGATTTTATAATTTTAAGATCCGCTGCGATTTCTCTTCAGGCAGGCTGCAGGGGTCACATTGCCCGAAAGATATATGCTGCTAAAAGGGAGACAGCAGCGGCTATCTCCATCCAGAAATATATTCGGATGTGGCTTACAAGGCATGCTCACTTAAAACTGTATTTTTCTGCTCTTATCATTCAATCTCATGTTCGAGGTTTTGTGACTCGCCAAAGATTCTTACATGCAAAAGAACATAGCGCTGCTACTTTTGTTCAGGCCTATTGGAGGATGTCCAAGGTTAGGTCATCTTTCCTACGATATCAAACTTCAATTGTGGCAATACAATGCCTTTGGCGGTGCAGACAAGCAAAAAGAGAGTTACGGAGACTTAAACAAGAGGCAAATGAAGCTGGTGCTCTTCGATTAGCCAAGAATAAACTGGAGAAGCAAATGGAAGATCTCACATGGCGTTTGCATCTTGAAAAGAAAATAAGGGTTTCCAATGAAGAGGCTAAAAAAACAGAGATTTCCAAACTTCAAAAGATGTTAGATGCTTTGAATCTTGAATTGGATGCTGCTAAATTGGCAAAAATTAACGAGTGCAACAAGAATGCTGTTCTGCAAAATCAATTAGAATTATCAGTAAAGGAAAAGTCTGCTTTGAAACGGGAGCTAGTAGCAGTGGATGAATTGCGAAAGGAAAATGCTTTATTAAAGGTTTCATTGGATGCATTTGAAAGGAAGTACAAGACCTTAGAGCTTGAGCTTATGAATGCTCAAAAAGGCCGGGATGAAACCATGGAGAAACTGAGGGAGTTTGAACAGAAGTGTTCTCAACTCGAGCAAAATGAAAAAAGGCTTGAGGAAAAGTTAAAGAGTTTAGAGAATGAAAATCACGTGCTTCGTCAGAAAGCATTAAGTACCCCTTTTAAGAGTAACCGTCCAGGTTTTGCCAAGTCAGTGTCAGAAAAATTCTCAACTGCAATTACCCCTCACACTGATCGAAAGACCATATTTGAGTCACCCACGCCCACAAAACTTATTGCCCCTTTTACAGTAGGCTTGTCAGACTCTCGTCGATCTAAGTTAACAGCAGAGAAGCACCAGGATAACTATGAATTCCTCTCCAAGTGTATAAAAGAAAATTTGGGATTTAAAAATGGTAAACCTATTGCTGCTCGTATTATATATAAATGTCTGCTTCATTGGCATTCATTTGAAAATGAGCGCACAGCAATTTTTGATTCCATCATCGAAGGTATAAATGAGGTTCTAAAGGTTAGGGAGGATGACATTGTCCTGCCATATTGGCTGTCCAATACCTCTGCGCTTCTATGCCTTTTACAGAGGAACTTACGGTCAAATGGTTTTTTAACTGCCACTGNTCAGCGTTATCCTGGATCATCTGGTTTAACCAGCCGGACAGGACATGGACCAAAATCTCCGTTGCAGTTTATAGGGTATNATGATGGTGTATCACATGTGGAGGCAAGATATCCTGCTATACTTTTTAAACAACAGCTAACTGCTTGTGTAGAGAAGATTTTTGGTCTGTTGCGTGACAATTTGAAAAAAGAACTTTCTCCACTGCTGGGATCATGTATTCAGTCACCCAAAACAGGACGAGGAGTGCAAGGGGCAAAATTGTCTAGATCTCCTGGTGGGATTCCCCAGCCATCTTCTGGTGGTCAGTGGGATAACATTATCAAATTTTTGGATTCTCTCATGAGCAAACTTCGTGGAAATCATGTCCCATCCTTCTTCATCCGTAAACTAGTTACCCAAGTGTTTTCCTTCATCAATATTACACTCTTCAACAGTCTTCTCTTGCGTCGGGAATGTTGTACTTTCTCAAATGGTGAATATGTGAAGTCTGGTCTAGCAGAACTGGAGAAATGGATAGTTAATGCAAAGGAAGAGTATGCAGGGACATCCTGGCATGAGCTCAATTACATACGACAAGCTGTTGGGTTCTTGGTAATACATCAGAAAAGAAAGAAATCTTTGGAAGAGATTCGGCAAGATCTTTGTCCGGCATTGACAGTGAGGCAAATCTATCGAATCAGTACAATGTACTGGGATGACAAGTATGGAACCCAAAGTGTGTCCAATGAGGTGGTTAGTGTAATGAGAGAAATTGTCAGCAAGGACAATCAGAACCTGACCTCAAATTCTTTCTTATTGGATGATGATCTGAGCATCCCTTTCTCTGCTGAAGACATAGATATGGCTATCCCTGCCATAGATCTTGATGAGATTCATCTACCAGAATTTGTGTCCGAATATTCCTGTGCTCAGTTTCTTATTTCACATCAGAAGTAA 4554 0.4023 MNLLHGSKVWVEDRDSAWLPAEVLDSDGNKILLLTDSGKKVFASKEKLFPRDADEEEHGGFEDMTRLAYLNEPGVMFNLRRRYALNDIYTYTGSILIAVNPFTKLPHLYDSHMMEQYKGAPLGQLSPHVFAVADASYRAMMNEGKSQSILVSGESGAGKTETTKLIMQYLTFVGGRAAGDDRTVEQQVLESNPLLEAFGNARTVRNDNSSRFGKFVEIQFDSNGRISGAAIRTYLLERSRVVQITDPERNYHCFYQLCSFERDAEKYKLGHPSHFHYLNQSKIYELDGVSNSEEYLKTRRAMDIVGISHQDQEAIFRVLAAILHLGNIEFSPGKEHDSSAVKNDKSRFHMQMASDLFMCDVDLLLATLCTRSIQTREGSIVKALDCNAAVAGRDALAKTVYARLFDWLVDKINMSVGQDINSKMQIGVLDIYGFECFKDNSFEQFCINFANEKLQQHFNEHVFKMEQDEYGKEEINWSYIEFVDNKDVLDLIEKKPIGIIALLDEACMFPKSTHETFSTKLFQHFRSHPRLGKEKFSQTDFTISHYAGKVTYHTDTFLDKNRDYVVVEHCNLLSSSKCPFVSGLFPLLSEESSRSSYKFSSVAARFKQQLQALMETLNSTEPHYIRCVKPNSLNRPQQFENASVIHQLRCGGVLEAVRISLAGYPTRRTYSEFVDRFGLIASEFMDGSYDDKSATEKILQKLKLENFQLGRTKVFLRAGQIGILDQRRAEVLDNAAKCIQRRMRTFITHQDFIILRSAAISLQAGCRGHIARKIYAAKRETAAAISIQKYIRMWLTRHAHLKLYFSALIIQSHVRGFVTRQRFLHAKEHSAATFVQAYWRMSKVRSSFLRYQTSIVAIQCLWRCRQAKRELRRLKQEANEAGALRLAKNKLEKQMEDLTWRLHLEKKIRVSNEEAKKTEISKLQKMLDALNLELDAAKLAKINECNKNAVLQNQLELSVKEKSALKRELVAVDELRKENALLKVSLDAFERKYKTLELELMNAQKGRDETMEKLREFEQKCSQLEQNEKRLEEKLKSLENENHVLRQKALSTPFKSNRPGFAKSVSEKFSTAITPHTDRKTIFESPTPTKLIAPFTVGLSDSRRSKLTAEKHQDNYEFLSKCIKENLGFKNGKPIAARIIYKCLLHWHSFENERTAIFDSIIEGINEVLKVREDDIVLPYWLSNTSALLCLLQRNLRSNGFLTATXQRYPGSSGLTSRTGHGPKSPLQFIGYXDGVSHVEARYPAILFKQQLTACVEKIFGLLRDNLKKELSPLLGSCIQSPKTGRGVQGAKLSRSPGGIPQPSSGGQWDNIIKFLDSLMSKLRGNHVPSFFIRKLVTQVFSFINITLFNSLLLRRECCTFSNGEYVKSGLAELEKWIVNAKEEYAGTSWHELNYIRQAVGFLVIHQKRKKSLEEIRQDLCPALTVRQIYRISTMYWDDKYGTQSVSNEVVSVMREIVSKDNQNLTSNSFLLDDDLSIPFSAEDIDMAIPAIDLDEIHLPEFVSEYSCAQFLISHQK* 1518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1708 1517 SMART DIL_2 1335 1442 IPR002710 -
Vra6g1708 1517 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 30 778 IPR027417 -
Vra6g1708 1517 Gene3D - 435 620 - -
Vra6g1708 1517 ProSiteProfiles Dilute domain profile. 1159 1460 IPR002710 -
Vra6g1708 1517 Coils Coil 864 894 - -
Vra6g1708 1517 Coils Coil 972 1048 - -
Vra6g1708 1517 SMART iq_5 754 776 IPR000048 GO:0005515
Vra6g1708 1517 SMART iq_5 779 801 IPR000048 GO:0005515
Vra6g1708 1517 SMART iq_5 731 753 IPR000048 GO:0005515
Vra6g1708 1517 SMART iq_5 802 824 IPR000048 GO:0005515
Vra6g1708 1517 SMART iq_5 827 849 IPR000048 GO:0005515
Vra6g1708 1517 SMART iq_5 850 872 IPR000048 GO:0005515
Vra6g1708 1517 Pfam Myosin head (motor domain) 62 717 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vra6g1708 1517 PRINTS Myosin heavy chain signature 89 108 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vra6g1708 1517 PRINTS Myosin heavy chain signature 146 171 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vra6g1708 1517 PRINTS Myosin heavy chain signature 193 220 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vra6g1708 1517 PRINTS Myosin heavy chain signature 425 453 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vra6g1708 1517 PRINTS Myosin heavy chain signature 478 506 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vra6g1708 1517 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 4 53 IPR004009 GO:0003774|GO:0005524|GO:0016459
Vra6g1708 1517 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 827 883 IPR027417 -
Vra6g1708 1517 SMART MYSc_2a 53 730 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vra6g1708 1517 PANTHER PROTEIN OPAQUE1-LIKE 4 1514 - -
Vra6g1708 1517 ProSiteProfiles IQ motif profile. 806 832 IPR000048 GO:0005515
Vra6g1708 1517 CDD MYSc_Myo11 73 717 IPR036018 -
Vra6g1708 1517 Gene3D Kinesin motor domain 62 659 IPR036961 -
Vra6g1708 1517 Coils Coil 913 940 - -
Vra6g1708 1517 ProSiteProfiles IQ motif profile. 755 784 IPR000048 GO:0005515
Vra6g1708 1517 ProSiteProfiles IQ motif profile. 851 880 IPR000048 GO:0005515
Vra6g1708 1517 Gene3D Myosin VI head, motor domain, U50 subdomain 308 598 - -
Vra6g1708 1517 ProSiteProfiles Myosin motor domain profile. 59 729 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vra6g1708 1517 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 778 826 IPR027417 -
Vra6g1708 1517 Coils Coil 948 968 - -
Vra6g1708 1517 Pfam IQ calmodulin-binding motif 806 823 IPR000048 GO:0005515
Vra6g1708 1517 Pfam IQ calmodulin-binding motif 781 799 IPR000048 GO:0005515
Vra6g1708 1517 Pfam IQ calmodulin-binding motif 756 775 IPR000048 GO:0005515
Vra6g1708 1517 Pfam IQ calmodulin-binding motif 829 848 IPR000048 GO:0005515
Vra6g1708 1517 Pfam DIL domain 1336 1439 IPR002710 -
Vra6g1708 1517 CDD MyosinXI_CBD 1110 1483 IPR037975 GO:0007015
Vra6g1708 1517 Gene3D - 249 306 - -
Vra6g1708 1517 Gene3D - 731 781 - -
Vra6g1708 1517 Gene3D - 782 829 - -
Vra6g1708 1517 Gene3D - 830 879 - -
Vra6g1708 1517 Gene3D - 663 730 - -
Vra6g1708 1517 PANTHER MYOSIN 4 1514 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1708 Vra-Chr6 33247279 33281688 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1708 1 1513 Myosins gene family AT4G33200 72.589 0.0 2269
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1708 K10357 - gmx:100790815 2772.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1708 6 33247279 33281688 Vra6g1708 6 33247279 33281688 ECH
Vra6g1708 6 33247279 33281688 Vra5g1341 5 20285566 20307347 PCT