Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1703 ATGGGGTGGGGTCACCTCGGAAGGAATGGGTCAGATTCAGGCGACGGAACGGAGGCTGGTCCGAGCTCCACCGCCACCGAGCCACGGCGGTTCCCACTGGCGGCACAGCCAGAAATGATGCGTGCCGCCGAGAAGGACGATCAATACGCATCTTTCGTTTACGAAGCCTGTCGTGATGCCTTTCGCCACCTCTTTGGTACCAGAGTTGCAGTGGCTTACCAAAACGAGGTTGCAGGAACTTATGGACTTCCTCCTACGCCTGCGAGGCGTGCTCTTTTCATTGTATATCAGACGGCTATTCCATATATGGCAGAACGAATTAGTTCTAGAATTGCTTCACGAGGCATTGTCCTTGCTGACACAGAATCTGCCGAGGGTTTTGGAGAAAATGCCCACAGGAGCTCTGGTTCTCAGATATCTGGCACTGGTCCTTTATCCTCGTCGGGACAATCTGTGACAACTCTGTCAAGGTTGAAGGGGAAACTGAGTGCATTTTGGTTGCATTGGGTTCAGAGATGGCCCACGATGCTCCCTTTTGTTCGCGAGTTCTTGCAGTTGGCTCTTCGTGCTAACCTCATGTTATTCTACTTTGAGGGCCTCTATTATCATATATCCAAACGTGCTGCTGGCATTCGTTATGTATTTATTGGAAAAGCATCAAATCAAAGACCTAGATACCAAATACTGGGAGTATTTCTGTTGATTCAACTTTGTATAATAGCTGCTGAAGGTCTCCGCCGAAGAAATTTTACTTCAATTGCTGGTTCAGTTCAGCAAGCATCCTTTGCATCCCACGATAGATCAGCAGGACATGGTTTACCTGTTTTAAATGAAGAGGGTAATCTGGCAACTCCAGATATTGAGAAAGAAAGTTGGGTCTCTGATTCTTCATCTTCTGAGCATCATGCAGTTAGTGGGGTTAGTAAGTGCACACTTTGCCTGAGTAATCGTCAATACCCAACAGCTACTTCCTGTGGCCATGTATTCTGCTGGAACTGTATCACAGAATGGTGCAACGAAAAGCCAGAGTGCCCTCTTTGCCGCACCCCCATAACACACTCGAGTCTAGTTTGTGTATATCATTCGGACTTCTAG 1095 0.4776 MGWGHLGRNGSDSGDGTEAGPSSTATEPRRFPLAAQPEMMRAAEKDDQYASFVYEACRDAFRHLFGTRVAVAYQNEVAGTYGLPPTPARRALFIVYQTAIPYMAERISSRIASRGIVLADTESAEGFGENAHRSSGSQISGTGPLSSSGQSVTTLSRLKGKLSAFWLHWVQRWPTMLPFVREFLQLALRANLMLFYFEGLYYHISKRAAGIRYVFIGKASNQRPRYQILGVFLLIQLCIIAAEGLRRRNFTSIAGSVQQASFASHDRSAGHGLPVLNEEGNLATPDIEKESWVSDSSSSEHHAVSGVSKCTLCLSNRQYPTATSCGHVFCWNCITEWCNEKPECPLCRTPITHSSLVCVYHSDF* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1703 364 ProSiteProfiles Zinc finger RING-type profile. 310 348 IPR001841 -
Vra6g1703 364 SMART ring_2 310 347 IPR001841 -
Vra6g1703 364 ProSitePatterns Zinc finger RING-type signature. 325 334 IPR017907 -
Vra6g1703 364 MobiDBLite consensus disorder prediction 128 149 - -
Vra6g1703 364 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 277 361 IPR013083 -
Vra6g1703 364 CDD RING-HC_PEX10 309 348 - -
Vra6g1703 364 Pfam Pex2 / Pex12 amino terminal region 80 247 IPR006845 -
Vra6g1703 364 PANTHER PEROXISOME BIOGENESIS FACTOR 10 27 361 - -
Vra6g1703 364 SUPERFAMILY RING/U-box 309 353 - -
Vra6g1703 364 PANTHER PEROXISOME ASSEMBLY PROTEIN 10 27 361 - -
Vra6g1703 364 MobiDBLite consensus disorder prediction 1 31 - -
Vra6g1703 364 MobiDBLite consensus disorder prediction 127 149 - -
Vra6g1703 364 Pfam Zinc finger, C3HC4 type (RING finger) 309 353 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1703 305 360 C3H Transcription Factor Family AT4G27470 37.879 2.17e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1703 K13346 - gmx:100783914 661.759