Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1700 ATGAAGCAAAGAGAAGTTGGAGTGATATACAAGAGAAGAATGGAAAGAACACAAGACTACTTAAGATATTGTCTTCAGACAGCACAAGAAAATGGAATATTAGATCTCATTCTGAGCTGCAATGGTGAATTTCAACCATCTCCACTCTCTCTTCACTCCATTACCAGCCCTCAAGCTCATGCTCATGCTCACCACCACCCCAATCTAGCACTCATTATTCATCAAGCTAAAACCAATGGCTGGTACATTCATCCAAATGAGATTAAATTGGAACAAAAAATTGGGGAAGGAAGCACCGCAGAGATTCACAGAGGAACATGGCGTGGATTTGAGGTCGCAGTCAAGTGCATTTCGCAAGACTTTTTCCGTACAAATGAAAACGGCGTCGTTTACTTCTCTCAGGAACTCGAAACGCTCTCGCGCCAACGCCACAGGTTCGTGCTTCAGCTCATGGGCGCCTGCATCGAACCTCCACACCACGCGTGGGTGGTCACCGAGTACCTCAGCACCACGCTCAAGGAGTGGCTCCATGGACCTGGGAACCGGCGCAGGGAGCGGATTGCGCCACTTCCACCCTTGCACGAGAGAGTGGGCCGGGCCTTGGAAATAGCCCAAGCTATGCAATACTTGCACGAACAAAAGCCCAAATTGGTTCACCGCGACTTGAAGCCCAGCAACATTTTTCTTGATGACGCCCTGCACGTTAGAGTCGCGGACTTCGGCCATGCACGGTTCTTGGGTGACGAAGAAATGGCCCTCACCGGAGAAACAGGAACATACGTTTACATGGCACCAGAGGTAATCCGATGTGAACCTTATAATGAAAGTTGTGATGTATATAGTTTTGGGATCATACTGAACGAGCTACTAACTGGGAATTACCCTTATGTTGAGACAGAATATGGTCCCACCAAGATTGCCATGGAAGTTGTGGAGGGTAAGCTTCGACCTAAGCTTCCATGTGATGATGATGTTGATAAACTGGGAGAGCTTATTCACCTTATTTGTCTTTGTTGGGACTCAAATCCTACTACTCGACCATCCTTTGCAACAATCACCCTTTCTCTCAAAGCTTATGTTAAGAACAATCTCATTTAA 1098 0.469 MKQREVGVIYKRRMERTQDYLRYCLQTAQENGILDLILSCNGEFQPSPLSLHSITSPQAHAHAHHHPNLALIIHQAKTNGWYIHPNEIKLEQKIGEGSTAEIHRGTWRGFEVAVKCISQDFFRTNENGVVYFSQELETLSRQRHRFVLQLMGACIEPPHHAWVVTEYLSTTLKEWLHGPGNRRRERIAPLPPLHERVGRALEIAQAMQYLHEQKPKLVHRDLKPSNIFLDDALHVRVADFGHARFLGDEEMALTGETGTYVYMAPEVIRCEPYNESCDVYSFGIILNELLTGNYPYVETEYGPTKIAMEVVEGKLRPKLPCDDDVDKLGELIHLICLCWDSNPTTRPSFATITLSLKAYVKNNLI* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1700 365 ProSitePatterns Serine/Threonine protein kinases active-site signature. 217 229 IPR008271 GO:0004672|GO:0006468
Vra6g1700 365 PANTHER OS09G0443600 PROTEIN 3 361 - -
Vra6g1700 365 Pfam Protein kinase domain 90 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g1700 365 ProSitePatterns Protein kinases ATP-binding region signature. 94 115 IPR017441 GO:0005524
Vra6g1700 365 Gene3D Phosphorylase Kinase; domain 1 76 168 - -
Vra6g1700 365 SMART serkin_6 88 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g1700 365 Gene3D Transferase(Phosphotransferase) domain 1 189 364 - -
Vra6g1700 365 ProSiteProfiles Protein kinase domain profile. 88 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g1700 365 SUPERFAMILY Protein kinase-like (PK-like) 65 352 IPR011009 -
Vra6g1700 365 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 3 361 - -
Vra6g1700 365 CDD STKc_MAP3K-like 94 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1700 Vra-Chr6 33080634 33082142 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1700 78 361 MAP Kinase Kinase Kinase AT2G17700 37.895 2.18e-50 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-8 Vra6g1700 Pkinase 3.9e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1700 - - pvu:PHAVU_001G0393001 660.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1700 6 33080634 33082142 Vra6g1700 6 33080634 33082142 ECH