Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1697 ATGGACGCAGGCTACAATCCTCGTACGGTCGAAGAGGTCTTTAGGGATTTCAAAGGTCGCAGAGCTGCTCTGATTAAAGCTCTCACCACTGATGTTGAAGAGTTCTACCAGCAGTGTGATCCCGAGAAGGAAAATCTTTGCCTTTATGGATTTCCAAGTGAGCAGTGGGAAGTCAATCTGCCAGCTGAGGAAGTGCCTCCAGAGCTTCCAGAGCCAGCATTAGGCATTAACTTTGCCAGAGATGGGATGCAGGATAAGGACTGGCTGTCTTTGGTTGCTGTACACAGTGATGCTTGGTTACTTGCTGTGGCTTTTTATTTTGGTGCTAGGTTTGGGTTTGACAAGGCTGATAGGAAGCGACTATTTAACATGATTAATGATCTTCCAACTATATTTGAGGTTGTTACTGGGATGGCCAAGAAACAAGGAAAGGAAAAGTCATCAGTTTCAAATCATAGCAGTAACAAATCAAAATCAAACTCTAAGCGAGGTTCTGAATCAAAGAACACAAAAGCAATGCAATCAAAGGACGAGGATGATGAGGGTGTGGCTTTGGAAGCTGATGATGATGAGGAGCATGAAGAGACTTTCTGTGGGGCATGTGGAGAGAGCTATACTTCTGATGAGTTCTGGATTTGCTGTGACATCTGTGAGAAATGGTTCCATGGAAAGTGTGTGAAGATTACACCTGCAAGAGCTGAGCACATCAAGCAGTACAAATGTCCATCCTGCAGCAACAAGAGAGCTAGACCTTGA 756 0.4458 MDAGYNPRTVEEVFRDFKGRRAALIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGMQDKDWLSLVAVHSDAWLLAVAFYFGARFGFDKADRKRLFNMINDLPTIFEVVTGMAKKQGKEKSSVSNHSSNKSKSNSKRGSESKNTKAMQSKDEDDEGVALEADDDEEHEETFCGACGESYTSDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1697 251 Pfam PHD-finger 197 247 IPR019787 -
Vra6g1697 251 ProSiteProfiles Zinc finger PHD-type profile. 195 247 IPR019787 -
Vra6g1697 251 PANTHER CPG BINDING PROTEIN 4 251 IPR045104 GO:0006355|GO:0042393
Vra6g1697 251 ProSitePatterns Zinc finger PHD-type signature. 198 244 IPR019786 -
Vra6g1697 251 SMART PHD_3 197 245 IPR001965 -
Vra6g1697 251 SUPERFAMILY FYVE/PHD zinc finger 188 248 IPR011011 -
Vra6g1697 251 CDD PHD_AL_plant 197 247 IPR044104 -
Vra6g1697 251 Pfam Alfin 9 137 IPR021998 GO:0006355|GO:0042393
Vra6g1697 251 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 4 251 - -
Vra6g1697 251 MobiDBLite consensus disorder prediction 142 182 - -
Vra6g1697 251 MobiDBLite consensus disorder prediction 159 180 - -
Vra6g1697 251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 187 246 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1697 Vra-Chr6 33030718 33034361 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1697 3 250 Alfin-like Transcription Factor Family AT3G42790 76.707 5.91e-127 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Vra6g1697 Alfin 2.6e-69 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1697 - - gmx:100797908 463.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1697 6 33030718 33034361 Vra6g1697 6 33030718 33034361 ECH
Vra5g1365 5 20450667 20453676 Vra6g1697 6 33030718 33034361 ECH