Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1696 ATGAGTTCGAGTCCATCAACGTACGAGGAATCGCAACCCCACCCGCCCCAAGAAATAGATTGGCACATGCTCGACAAGTCCAAGTTCTTCTGCCTAGGAACAGCCCTCTTCTCCGCCGTCTCCGCCGCCCTCTACCCCGCCGTCGTTTTGAAGACACGTCAGCAAATGTCCGCGGCCGAAATCTCGTGCCGCCACATGTCGCGCTCCATCATGCGGTATGAGGGTCTCCGAGGTTTCTACCGAGGTTTCGGCACCTCCTTGTTGGGAACAATCCCTGCACGTGCGCTTTACATGTCGGCGCTAGAAGTAACCAAGAGTAAAGTCGCCTCCGCCACCCTTCGATGGGGTTTCTCCGATGCCTCTGCCACTGCAATCGCTAATGCCGCAGGAGGAGTAGCTTCTGCCATGGCAGCACAGTTGGTGTGGACCCCAGTCGATGTTGTTAGCCAGAGACTCATGGTACAAGGAGTGTGCTACAGAAATGGTTTTGACGCATTCAGAAAAATTCTGGGCGTGGACGGTCCAAGAGGGTTCTACAGGGGATTCGGGGTTTCCATCGTGACCTACGCTCCCTCCAACGCGGTCTGGTGGGCTTCGTATTCGATCGTGCAGAAGCTCATCTGGGGCACGATGGGTTCGAAGGAGGGTTTGAGCTTGGGACGCGATTCGAGGGTGGTGATGGGGGTGCAAGGGTTAAGTGCAGTTATGGCAAGTGGGGTTTGTGCATTAGTGACGATGCCATTGGATACGATAAAGACGAGGTTGCAGGTGTTGGAGGCAGAGGAAGTGAGGGTCATTGAGGTGGTAAGAGATTTGGTGAGGGAAGGAGGAGTTTTGGCTTGTTATCGAGGGTTGGGACCAAGGTGTGTGTCCATGTCCATGTCTGCCGCCGCCATGATTACTACCTATGAGTTCTTGAAACGTGTGTCGGCTAAGAATGTTGATAGATTAGCACTGTATTCAGTCTAG 969 0.5397 MSSSPSTYEESQPHPPQEIDWHMLDKSKFFCLGTALFSAVSAALYPAVVLKTRQQMSAAEISCRHMSRSIMRYEGLRGFYRGFGTSLLGTIPARALYMSALEVTKSKVASATLRWGFSDASATAIANAAGGVASAMAAQLVWTPVDVVSQRLMVQGVCYRNGFDAFRKILGVDGPRGFYRGFGVSIVTYAPSNAVWWASYSIVQKLIWGTMGSKEGLSLGRDSRVVMGVQGLSAVMASGVCALVTMPLDTIKTRLQVLEAEEVRVIEVVRDLVREGGVLACYRGLGPRCVSMSMSAAAMITTYEFLKRVSAKNVDRLALYSV* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1696 322 ProSiteProfiles Solute carrier (Solcar) repeat profile. 225 309 IPR018108 -
Vra6g1696 322 ProSiteProfiles Solute carrier (Solcar) repeat profile. 122 206 IPR018108 -
Vra6g1696 322 ProSiteProfiles Solute carrier (Solcar) repeat profile. 27 107 IPR018108 -
Vra6g1696 322 Pfam Mitochondrial carrier protein 123 207 IPR018108 -
Vra6g1696 322 Pfam Mitochondrial carrier protein 40 107 IPR018108 -
Vra6g1696 322 Pfam Mitochondrial carrier protein 230 313 IPR018108 -
Vra6g1696 322 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 9 315 - -
Vra6g1696 322 Gene3D Mitochondrial carrier domain 29 316 IPR023395 -
Vra6g1696 322 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER-LIKE PROTEIN 9 315 - -
Vra6g1696 322 SUPERFAMILY Mitochondrial carrier 23 306 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1696 Vra-Chr6 33020993 33022754 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1696 9 315 Chloroplast and Mitochondria Gene Families AT1G72820 61.310 4.13e-140 398
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1696 K15121 - gmx:100797365 465.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1696 6 33020993 33022754 Vra6g1696 6 33020993 33022754 ECH
Vra5g1366 5 20458163 20460048 Vra6g1696 6 33020993 33022754 ECH