Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1689 ATGACAGACAACAATCCAAAACCACCACCTGATACACCTGACAGTGATGATTTCTGCAACCAGTGGCCTTTTGAGCTCTCTGAGTACTTGCAATTCGATGATAACCAATGGATGCATGACGATATTCCGTCTTTTTCTTCTGAGAATGTCTCCAACCAGGTTCATCAACCCAGTAATGTACGTGAGTTTGAAAGAGATGAAAGCTACTTTGAAGGGTCTTCTAGCAGAGAAACTGGTGGACGTGAGAATCGGCAAGTTGTTAGAGAGAGATTTGCATTCAAAACAATTTCAGAGATTGAAGTACTAGACGATGGATACAGATGGAGGAAGTACGGAAAGAAAATGGTGAAGAACAACCCTAATCCAAGGAATTACTATAGATGTTCAGTGGATGGATGCTCTGTGAAGAAGAGAGTGGAGAGAGATAAGGATGACCCTAGGTGTGTAATAACAACCTACGAAGGAAACCACACTCATCCAAGTTCTTCCTAG 492 0.4207 MTDNNPKPPPDTPDSDDFCNQWPFELSEYLQFDDNQWMHDDIPSFSSENVSNQVHQPSNVREFERDESYFEGSSSRETGGRENRQVVRERFAFKTISEIEVLDDGYRWRKYGKKMVKNNPNPRNYYRCSVDGCSVKKRVERDKDDPRCVITTYEGNHTHPSSS* 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1689 163 Pfam WRKY DNA -binding domain 103 160 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra6g1689 163 MobiDBLite consensus disorder prediction 59 82 - -
Vra6g1689 163 SMART WRKY_cls 102 161 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra6g1689 163 MobiDBLite consensus disorder prediction 41 82 - -
Vra6g1689 163 Gene3D WRKY domain 89 155 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vra6g1689 163 ProSiteProfiles WRKY domain profile. 97 162 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra6g1689 163 SUPERFAMILY WRKY DNA-binding domain 95 161 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vra6g1689 163 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 12 161 IPR044810 GO:0003700
Vra6g1689 163 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 12 161 - -
Vra6g1689 163 MobiDBLite consensus disorder prediction 41 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1689 Vra-Chr6 32943440 32944836 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1689 24 161 WRKY Transcription Factor Family AT5G26170 49.057 1.02e-39 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vra6g1689 WRKY 5.8e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1689 - - gmx:100796836 273.092
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1689 6 32943440 32944836 Vra6g1689 6 32943440 32944836 ECH