Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1687 ATGCAACACGTAGGGATCAACAATAACTCTGTGGCATCTCTCAATTATAGCAAGTTTGATATTGAAAACAACTTAGGGAAGATGGTGTATGCGTTGATAACTTACAATGCTTCTGCCCAACTCCTGGCTGTTTCGTGGTCCTTTGATGGAACTAAATCTTCTTCTACTCCTAGCGGTTATCTTTCGTACAAGATCGACCTGTGGGCAGTTTTGCCGGAGTGGGTCAATGTTGGGTTTTCGGGTTCAACTGGATCGTCCACTGAGAAAAACGTGATCCATACCTGGGAGTTCAGTTCAAACCTGGATCTTAATTCTACGCATGGAGTGGAAAGTGACATCGCAACCAAATGCAAGGTTCAGGTCAAGATAGTAGTTATTACAGTCATTTGTTCTATTGTTTTTGTGCTTGTTGTCATTAGTATTTCTTGGTTGATTATCAAAAAGAGAAGAACAGAGGATGGTTTTGATTTAGATAGAGATGTTATGCCTAGAAGGTTTGGTTATGAGGAAATAGTTGCAGCCACGAACGGGTTTGCAGACGATAGAAGGCTGGGAGAAGGGGGCTCTGGACAAGTTTACAAAGGATTTCTGGGAGATTCAGGGCGCGTGGTTGCTGTGAAAAGGATATTTTCTGATGTTGAAGATTCTGAGAGAGTATTTAGAAACGAGGTGAACATTATAAGTCGTCTTATACATAGAAACCTTGTGCAATTCATGGGGTGGTGCCACGAGAAAGAGGAGTTGATACTGGTTTTTGAGTACATGAGTAATGGAAGCCTTGACAATCATCTGTTTGGCAACAGAAGAAGTTTGACATGGGATGTGAGATACAAGATAGCATTAGGTGTGGCTAGAGCACTTCGTTATCTTCATGAAGACGCGGAGCAGAGTGTTGTTCATAGGGACATAAAGTCAGGAAATGTTTTGTTGGACACAGATTTCAACACAAAGATTAGTGACTTTGGGATAGCAAGGTTGGTGGATCCAAGATTGAGGACTCAGAGGACAAAGGTGGTGGGGACATATGGGTACCTAGCTCCAGAATATATAAACGGAGGGAGGGTTAGCAAAGAATCAGACATGTACAGTTTTGGGGTTTTGGCTTTGGAGATAGCATGTGGAAGGAGGACTTACCAGGATGGCGAAGATAATCATGTGCCTTTGGCGAAATGGGTATGGAAACATTATGTGGATGGGAATATTTTGAATGCTGCTGATGAGGAATTGAAGATGGATTTTGACATATATGAAATGAAATGTTTGCTCAGTGTAGGAATATGGTGTACCCTCCAAGACCACAAGGAAAGGCCAACCTCAGAACAGGTTATAAATGTTCTTAAACAAGAAGTGTCATTGCCAATGTTTTCTGCAAAATTCTCTAATAATGGGCAACCGGATCCCTTGGAATCATCATCCAGAAAAGCATAA 1428 0.4174 MQHVGINNNSVASLNYSKFDIENNLGKMVYALITYNASAQLLAVSWSFDGTKSSSTPSGYLSYKIDLWAVLPEWVNVGFSGSTGSSTEKNVIHTWEFSSNLDLNSTHGVESDIATKCKVQVKIVVITVICSIVFVLVVISISWLIIKKRRTEDGFDLDRDVMPRRFGYEEIVAATNGFADDRRLGEGGSGQVYKGFLGDSGRVVAVKRIFSDVEDSERVFRNEVNIISRLIHRNLVQFMGWCHEKEELILVFEYMSNGSLDNHLFGNRRSLTWDVRYKIALGVARALRYLHEDAEQSVVHRDIKSGNVLLDTDFNTKISDFGIARLVDPRLRTQRTKVVGTYGYLAPEYINGGRVSKESDMYSFGVLALEIACGRRTYQDGEDNHVPLAKWVWKHYVDGNILNAADEELKMDFDIYEMKCLLSVGIWCTLQDHKERPTSEQVINVLKQEVSLPMFSAKFSNNGQPDPLESSSRKA* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1687 475 Gene3D - 1 123 - -
Vra6g1687 475 SMART serkin_6 178 451 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g1687 475 SUPERFAMILY Concanavalin A-like lectins/glucanases 2 200 IPR013320 -
Vra6g1687 475 ProSitePatterns Legume lectins alpha-chain signature. 71 80 IPR000985 -
Vra6g1687 475 ProSitePatterns Serine/Threonine protein kinases active-site signature. 298 310 IPR008271 GO:0004672|GO:0006468
Vra6g1687 475 ProSitePatterns Protein kinases ATP-binding region signature. 184 207 IPR017441 GO:0005524
Vra6g1687 475 Gene3D Phosphorylase Kinase; domain 1 163 254 - -
Vra6g1687 475 Gene3D Transferase(Phosphotransferase) domain 1 255 462 - -
Vra6g1687 475 PANTHER - 2 458 - -
Vra6g1687 475 ProSiteProfiles Protein kinase domain profile. 178 455 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g1687 475 SUPERFAMILY Protein kinase-like (PK-like) 161 449 IPR011009 -
Vra6g1687 475 Pfam Legume lectin domain 2 104 IPR001220 GO:0030246
Vra6g1687 475 Pfam Protein kinase domain 179 444 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g1687 475 PANTHER LECTIN RECEPTOR KINASE 2 458 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1687 Vra-Chr6 32927680 32929107 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1687 3 458 Receptor kinase-like Gene Family AT5G10530 44.397 2.49e-130 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vra6g1687 Pkinase 7.2e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1687 - - vra:106763733 926.391