Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1686 ATGAGTTTGCTAAAGATGGTGACAACTTTTGTTCTTCTGCTGCTTCTTCATCCTCCCTTTCTTAAAACTGTAGAATCACTAAATTTCAACATAACAAACTTCAACGACCCTGAGAGTGAAAAAAACATGGCATACATAGGTGATGGCAAAGCCAGCAACGGCAGCGTAGAACTCAACATTGTGGATTATCTTTTCCGCGTTGGAAGAGCCTTGTACGCAAAACCTCTGCGCCTGTGGGACCAATCATCGAATGTTCTCACAGACTTCACCACACACTTCACTTTCTCCATTGACAGAGCCAAAAACGGCACCTATGCTGACGGTTTCGCCTTCTACATGGCCCCTCATGGCTACCCGATTCCTCCCAACTCAGGTGGTGGCACTTTTGCCCTTTTCAACACCACTTCCAACACCTTTATTCGCCACAACCACGTCCTCGCGGTTGAGTTTGACACGTTCAATGGCACCATTGACCCTCCCATGCAGCATGTTGGCATAGACGATAACTCTCTCAGTTCCGTGACTTCTGCCAAATTTGACATTGACAAAAACCTGGGAAAGAAATGTAACGTTTTGATAACCTACACAGCTTCCAACAAGACCCTCTTTGTGGCTTGGTCCTTCAACGGAACAGCAACGTCACACTCCAATTCTTCACTTTCTTACACGGTTGACCTCATGGAAATTCTACCAGAGTGGGTAGATGTGGGGTTCTCCGCTTCAACAGGCGAATTCACTGAACACAATGTTATTTACACCTGGGACTTTAGTTCAACGTTGAATTCCGATGCTTCGGATAATTCCTCCGGTGGGGACGGGAACGGAAAACGAAAAGTTTGGGTGATTGCTGTGGCGAGTTCTTCGGCGGTCTTGGTGGCCGTGGTTGTGAGTGTTGCAGTGTGGGCAATAATGAAGAAGAAAATAAGGGATAAGGTTGATAAGAGTAATGATGGTGAAGGTGGAGCCAACTTGGTTAAGTTTGATTTGGATAGAGCAACTATACCAAGAAGATTTGATTACAGAGAACTACTTGCAGCCACCAACGGATTCGCAGATGATAGAAAGCTTGGGCGAGGAGCTTCGGGACAGGTTTACAAAGGGATTCTGAGTGATTTGGGGAGGGTTGTTGCGGTGAAAAGGATTTTCGCTAAGTTTGCAAATTCAGAGAGAGTTTTCATCAATGAGGTTAGGGTTATAAGCCGTCTTATACACAGAAACTTGGTGCAGTTCGTAGGGTGGTGCCACGAGCAAGGTGAGTTTCTGTTGCTTTTTGAGTACATGCCTAATGGAAGTCTCGACACTCATCTCTTTGGGGACAAAAAACCTTTGACCTGGGATGTTAGGTACAAGGTAGCATTAGGGGTGGCTGCAGCAGTTCGTTATCTTCATGAAGATGCGGAGCAGTGTGTTCTTCACAGGGATATCAAGTCAGCAAATGTGTTGTTGGACACAGATTTTAGCACCAAGCTTGGAGATTTTGGAATGGCAAAGTTTGTGGATCCGAGGTTGAGGACTCAAATGACAGGGGTGGTGGGGACTTTCGGGTACCTTGCCCCAGAATACCTGAACGGACGTAAGGCTAGCAAGGAATCAGACATTTATAGTTTTGGGGTTGTGGCTCTTGAGATCGCATGTGGAAGGAGAACTTACCATGATGGAGAATTTCATGTGCCTCTGATGAACTGGGTGTGGCAACAGTATGTGAAAGGGAATGTGATGGATGTTGTTGATGAGAGATTGAACAAAGAGTTTAATGTAGATGAAATGAGAAGCTTGATCATTGTGGGGTTGTGGTGTACTAACCCTAACGACAAGGAAAGGCCAAAGGCTGCACAAGTGATCAAAGTTCTTGAACTAGAAGCGCCATTGCCGGAGCTTCCACTTGATATGCATGACCGTCTTCCTCCTTCTCTAGTTACATATTCAGAACAACCTAATTTTCAGTCCGTTCAGACACTACCTTTCACCGACAGCTTTATAAGTGTTGGACGTTAA 1995 0.4546 MSLLKMVTTFVLLLLLHPPFLKTVESLNFNITNFNDPESEKNMAYIGDGKASNGSVELNIVDYLFRVGRALYAKPLRLWDQSSNVLTDFTTHFTFSIDRAKNGTYADGFAFYMAPHGYPIPPNSGGGTFALFNTTSNTFIRHNHVLAVEFDTFNGTIDPPMQHVGIDDNSLSSVTSAKFDIDKNLGKKCNVLITYTASNKTLFVAWSFNGTATSHSNSSLSYTVDLMEILPEWVDVGFSASTGEFTEHNVIYTWDFSSTLNSDASDNSSGGDGNGKRKVWVIAVASSSAVLVAVVVSVAVWAIMKKKIRDKVDKSNDGEGGANLVKFDLDRATIPRRFDYRELLAATNGFADDRKLGRGASGQVYKGILSDLGRVVAVKRIFAKFANSERVFINEVRVISRLIHRNLVQFVGWCHEQGEFLLLFEYMPNGSLDTHLFGDKKPLTWDVRYKVALGVAAAVRYLHEDAEQCVLHRDIKSANVLLDTDFSTKLGDFGMAKFVDPRLRTQMTGVVGTFGYLAPEYLNGRKASKESDIYSFGVVALEIACGRRTYHDGEFHVPLMNWVWQQYVKGNVMDVVDERLNKEFNVDEMRSLIIVGLWCTNPNDKERPKAAQVIKVLELEAPLPELPLDMHDRLPPSLVTYSEQPNFQSVQTLPFTDSFISVGR* 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1686 664 CDD lectin_legume_LecRK_Arcelin_ConA 27 260 IPR001220 GO:0030246
Vra6g1686 664 SUPERFAMILY Protein kinase-like (PK-like) 334 649 IPR011009 -
Vra6g1686 664 Pfam Protein kinase domain 351 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g1686 664 ProSitePatterns Protein kinases ATP-binding region signature. 356 379 IPR017441 GO:0005524
Vra6g1686 664 PANTHER - 11 632 - -
Vra6g1686 664 ProSitePatterns Legume lectins alpha-chain signature. 230 239 IPR000985 -
Vra6g1686 664 ProSitePatterns Serine/Threonine protein kinases active-site signature. 470 482 IPR008271 GO:0004672|GO:0006468
Vra6g1686 664 ProSitePatterns Legume lectins beta-chain signature. 146 152 IPR019825 -
Vra6g1686 664 SUPERFAMILY Concanavalin A-like lectins/glucanases 25 264 IPR013320 -
Vra6g1686 664 Gene3D Transferase(Phosphotransferase) domain 1 427 632 - -
Vra6g1686 664 SMART serkin_6 350 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g1686 664 PANTHER PUTATIVE-RELATED 11 632 - -
Vra6g1686 664 Gene3D - 24 270 - -
Vra6g1686 664 Gene3D Phosphorylase Kinase; domain 1 321 426 - -
Vra6g1686 664 ProSiteProfiles Protein kinase domain profile. 350 634 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g1686 664 CDD STKc_IRAK 356 618 - -
Vra6g1686 664 Pfam Legume lectin domain 26 267 IPR001220 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1686 Vra-Chr6 32920730 32923238 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1686 6 630 Receptor kinase-like Gene Family AT5G10530 43.780 3.46e-173 507
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vra6g1686 Pkinase 1.7e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1686 - - vra:106763732 1132.47