Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1684 ATGTTGCCAACCATTGGAAATTTCCACTACTCCAAAGCTTTTCTTCTGTTCCTCATCCTCTGTATCCTTCCAATAAACTTGGCTCAACCACTTTCCTTCACCATAGCTAACTTTAACGACACTAAAAATGCAAGCATCGTTGGATACGCCGGCGTAGCCAAGGTTGAGGACGGATCTGTTGTGCTCAACCCAATCATCGAGAATGGAAAGGGAAGAGTCATTTATGGCCAACCTTTACGCCTAAAAAACTCTTCTGATGGACTTGCCACTGATTTTTCAACTCGTTTTTCATTCACTATCGACGCAACAGTAGCCAAATACGGTGATGGCTTTGCCTTCTTCTTGGCACCCCTTTTATACCAGATTCCGACTGTCACTTCTAATGGCTCCCTTCTCGGCCTATACGATGCCACCCAAAATAACATCATTGCTGTCGAATTTGACACTTATATAAACGAGTTAGACCCACCAGTGCAACACGTAGGGATCAACAATAACTCTGTGGCATCTCTCAATTATAGCAAGTTTGATATTGAAAGCAACTTAGGGAAGATGGTGCATGCGTTGATAACTTACAATGCTTCTGCCCAACTCCTGGCTGTTTCGTGGTCCTTTGATGGAACTAAATCTTCTTCTACTCCCAGCGGTTATCTTTCGTACAAGATTGACCTGTGGGCAGTTTTGCCGGAGTGGGTCAATGTTGGGTTTTCAGGTTCAACTGGATCATCCACTGAGAAAAACGTGATCCATACCTGGGAGTTCAGTTCAAACCTAGATCTTAATTCTACACATGGAGTGGAAAGTGACATCGCAACCAAATGCAAGGTTCAGGTCAAGATAGTAGTTATTACAGTCATTTGTTCTATTGTTTTTGTGCTTGTGGTCATTAGCATTTCTTGGTTGATTATCAAAAAGAGAAGAACAGAGGATGGTTTTGGTTTAGATAGAGATATTATGCCTAGAAGGTTTGGTTATGAGGAAATAGTTGCAGCCACGAACGGGTTTGCAGATGATAGAAGGCTGGGAGAAGGAGGCTCTGGACAAGTTTACAAAGGGTTTCTGGAAGATTCGGGGCGCGTGGTTGCTGTGAAAAGGATTTTTTCTGACGTTGAAGATTCTGAGAGAATATTTAGAAACGAGGTGAACATCATAAGTCGTCTTATACATAGAAACCTCGTGCAATTCATGGGGTGGTGCCAAGAGAAAGAAGAGTTATTACTGGTTTTTGAGTACATGAGTAATGGAAGCCTTGACAATCATCTGTTTGGTATCAGAAGAAGTTTGACATGGGATGTGAGATACAAGATAGCATTAGGTGTGGCTAGAGCACTTCGTTATCTTCATGAAGACGCGGAGCAGAGTGTTGTTCATAGGGACATAAAATCAGCTAATGTTTTGTTGGACACAGATTTCAACACAAAGATTAGTGACTTTGGGATAGCAAGGTTGGTGGATCCAAGATTGAGGACTCAGAGGACAAAGGTGGTGGGGACATATGGGTACCTAGCTCCAGAATATTTAAACGAAGGGAGGGTTAGCAAAGAATCAGACATGTACAGTTTTGGGGTTTTGGCTCTGGAGATAGCATGTGGAAGGAGGACTTACCAGGATGGCGAAGATAATCACGTGCCTTTGGCGAAATGGGTATGGAAACATTATGTGGATGGGAATATTTTGAATGCTGCTGATGAGGAATTGAAGATGGACTTTGACATATATGAAATGAAATGCTTGCTGAGTGTAGGAATATGGTGTACCCTCCAAGACCACAGGGAAAGGCCAACCTCAGAACAGGTTATAAATGTTCTTAAACAAGAAGTGCCATTGCCAATGTTTTCTGCAAGATTCTCTGATAATGGGCAACCGGATCCCTTTGAATCGTCATCCAGAAAAGAATAA 1899 0.4239 MLPTIGNFHYSKAFLLFLILCILPINLAQPLSFTIANFNDTKNASIVGYAGVAKVEDGSVVLNPIIENGKGRVIYGQPLRLKNSSDGLATDFSTRFSFTIDATVAKYGDGFAFFLAPLLYQIPTVTSNGSLLGLYDATQNNIIAVEFDTYINELDPPVQHVGINNNSVASLNYSKFDIESNLGKMVHALITYNASAQLLAVSWSFDGTKSSSTPSGYLSYKIDLWAVLPEWVNVGFSGSTGSSTEKNVIHTWEFSSNLDLNSTHGVESDIATKCKVQVKIVVITVICSIVFVLVVISISWLIIKKRRTEDGFGLDRDIMPRRFGYEEIVAATNGFADDRRLGEGGSGQVYKGFLEDSGRVVAVKRIFSDVEDSERIFRNEVNIISRLIHRNLVQFMGWCQEKEELLLVFEYMSNGSLDNHLFGIRRSLTWDVRYKIALGVARALRYLHEDAEQSVVHRDIKSANVLLDTDFNTKISDFGIARLVDPRLRTQRTKVVGTYGYLAPEYLNEGRVSKESDMYSFGVLALEIACGRRTYQDGEDNHVPLAKWVWKHYVDGNILNAADEELKMDFDIYEMKCLLSVGIWCTLQDHRERPTSEQVINVLKQEVPLPMFSARFSDNGQPDPFESSSRKE* 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1684 632 ProSitePatterns Serine/Threonine protein kinases active-site signature. 455 467 IPR008271 GO:0004672|GO:0006468
Vra6g1684 632 SUPERFAMILY Protein kinase-like (PK-like) 318 609 IPR011009 -
Vra6g1684 632 ProSiteProfiles Protein kinase domain profile. 335 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g1684 632 Gene3D Transferase(Phosphotransferase) domain 1 412 617 - -
Vra6g1684 632 CDD lectin_legume_LecRK_Arcelin_ConA 31 258 IPR001220 GO:0030246
Vra6g1684 632 SUPERFAMILY Concanavalin A-like lectins/glucanases 29 262 IPR013320 -
Vra6g1684 632 ProSitePatterns Legume lectins beta-chain signature. 143 149 IPR019825 -
Vra6g1684 632 ProSitePatterns Protein kinases ATP-binding region signature. 341 364 IPR017441 GO:0005524
Vra6g1684 632 PANTHER - 37 614 - -
Vra6g1684 632 PANTHER LECTIN RECEPTOR KINASE 37 614 - -
Vra6g1684 632 Pfam Protein kinase domain 336 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g1684 632 ProSitePatterns Legume lectins alpha-chain signature. 228 237 IPR000985 -
Vra6g1684 632 Pfam Legume lectin domain 31 261 IPR001220 GO:0030246
Vra6g1684 632 Gene3D - 29 270 - -
Vra6g1684 632 Gene3D Phosphorylase Kinase; domain 1 320 411 - -
Vra6g1684 632 SMART serkin_6 335 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1684 Vra-Chr6 32876515 32878793 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1684 11 616 Receptor kinase-like Gene Family AT5G10530 42.205 5.78e-154 457
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vra6g1684 Pkinase 6.8e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1684 - - vra:106763733 891.723