Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1683 ATGAGAATGAGGTTGCTAGAGATGGTGACAACTTTTGTTCTTCTGCTGCTTCTTCATCCTCCCTTTCTTAAAACTGTAGAATCACTAAATTTCAACATAACAAACTTCAACGACCCTGAGAGTGAAAAAAACATGGCATACATAGGTGATGGCAAAGCCAGCAACGGCAGCGTAGAACTCAACATTGTGGATTATCTTTTCCGCGTTGGAAGAGCCTTGTACGCAAAACCTCTGCGCCTGTGGGACCAATCATCGAATGTTCTCACAGACTTCACCACACACTTCACTTTCTCCATTGACAGAGCCAAAAACGGCACCTATGCTGACGGTTTCGCCTTCTACATGGCCCCTCATGGCTACCCGATTCCTCCCAACTCAGGTGGTGGCACTTTTGCCCTTTTCAACACCACTTCCAACACCTTTATTCGCCACAACCACGTCCTCGCGGTTGAGTTTGACACGTTCAATGGCACCATTGACCCTCCCATGCAGCATGTTGGCATAGACGATAACTCTCTCAGTTCCGTGACTTCTGCCAAATTTGACATTGACAAAAACCTGGGAAAGAAATGTAACGTTTTGATAACCTACACAGCTTCCAACAAGACCCTCTTTGTGGCTTGGTCCTTCAACGGAACAGCAACGTCACACTCCAATTCTTCACTTTCTTACACGGTTGACCTCATGGAAATTCTACCAGAGTGGGTAGATGTGGGGTTCTCCGCTTCAACAGGCGAATTCACTGAACACAATGTTATTTACACCTGGGACTTTAGTTCAACGTTGAATTCCGATGCTTCGGATAATTCCTCCGGTGGGGACGGGAACGGAAAACGAAAAGTTTGGGTGATTGCTGTGGCGAGTTCTTCGGCGGTCTTGGTGGCCGTGGTTGTGAGTGTTGCAGTGTGGGCAATAATGAAGAAGAAAATAAGGGATAAGGTTGATAAGAGTAATGATGGTGAAGGTGGAGCCAACTTGGTTAAGTTTGATTTGGATAGAGCAACTATACCAAGAAGATTTGATTACAGAGAACTACTTGCAGCCACCAACGGATTCGCAGATGATAGAAAGCTTGGGCGAGGAGCTTCGGGACAGGTTTACAAAGGGATTCTGAGTGATTTGGGGAGGGTTGTTGCGGTGAAAAGGATTTTCGCTAAGTTTGCAAATTCAGAGAGAGTTTTCATCAATGAGGTTAGGGTTATAAGCCGTCTTATACACAGAAACTTGGTGCAGTTCGTAGGGTGGTGCCACGAGCAAGGTGAGTTTCTGTTGCTTTTTGAGTACATGCCTAATGGAAGTCTCGACACTCATCTCTTTGGGGACAAAAAACCTTTGACCTGGGATGTTAGGTACAAGGTAGCATTAGGGGTGGCTGCAGCAGTTCGTTATCTTCATGAAGATGCGGAGCAGTGTGTTCTTCACAGGGATATCAAGTCAGCAAATGTGTTGTTGGACACAGATTTTAGCACCAAGCTTGGAGATTTTGGAATGGCAAAGTTTGTGGATCCGAGGTTGAGGACTCAAATGACAGGGGTGGTGGGGACTTTCGGGTACCTTGCCCCAGAATACCTGAACGGACGTAAGGCTAGCAAGGAATCAGACATTTATAGTTTTGGGGTTGTGGCTCTTGAGATCGCATGTGGAAGGAGAACTTACCATGATGGAGAATTTCATGTGCCTCTGATGAACTGGGTGTGGCAACAGTATGTGAAAGGGAATGTGATGGATGTTGTTGATGAGAGATTGAACAAAGAGTTTAATGTAGATGAAATGAGAAGCTTGATCATTGTGGGGTTGTGGTGTACTAACCCTAACGACAAGGAAAGGCCAAAGGCTGCACAAGTGATCAAAGTTCTTGAACTAGAAGCGCCATTGCCGGAGCTTCCACTTGATATGCATGACCGTCTTCCTCCTTCTCTAGTTACATATTCAGAACAACCTAATTTTCAGTCCGTTCAGACACTACCTTTCACCGACAGCTTTATAAGTGTTGGACGTTAA 2001 0.4553 MRMRLLEMVTTFVLLLLLHPPFLKTVESLNFNITNFNDPESEKNMAYIGDGKASNGSVELNIVDYLFRVGRALYAKPLRLWDQSSNVLTDFTTHFTFSIDRAKNGTYADGFAFYMAPHGYPIPPNSGGGTFALFNTTSNTFIRHNHVLAVEFDTFNGTIDPPMQHVGIDDNSLSSVTSAKFDIDKNLGKKCNVLITYTASNKTLFVAWSFNGTATSHSNSSLSYTVDLMEILPEWVDVGFSASTGEFTEHNVIYTWDFSSTLNSDASDNSSGGDGNGKRKVWVIAVASSSAVLVAVVVSVAVWAIMKKKIRDKVDKSNDGEGGANLVKFDLDRATIPRRFDYRELLAATNGFADDRKLGRGASGQVYKGILSDLGRVVAVKRIFAKFANSERVFINEVRVISRLIHRNLVQFVGWCHEQGEFLLLFEYMPNGSLDTHLFGDKKPLTWDVRYKVALGVAAAVRYLHEDAEQCVLHRDIKSANVLLDTDFSTKLGDFGMAKFVDPRLRTQMTGVVGTFGYLAPEYLNGRKASKESDIYSFGVVALEIACGRRTYHDGEFHVPLMNWVWQQYVKGNVMDVVDERLNKEFNVDEMRSLIIVGLWCTNPNDKERPKAAQVIKVLELEAPLPELPLDMHDRLPPSLVTYSEQPNFQSVQTLPFTDSFISVGR* 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1683 666 SMART serkin_6 352 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g1683 666 PANTHER - 13 634 - -
Vra6g1683 666 ProSitePatterns Serine/Threonine protein kinases active-site signature. 472 484 IPR008271 GO:0004672|GO:0006468
Vra6g1683 666 Gene3D - 26 272 - -
Vra6g1683 666 ProSitePatterns Protein kinases ATP-binding region signature. 358 381 IPR017441 GO:0005524
Vra6g1683 666 SUPERFAMILY Concanavalin A-like lectins/glucanases 27 266 IPR013320 -
Vra6g1683 666 CDD STKc_IRAK 358 620 - -
Vra6g1683 666 PANTHER PUTATIVE-RELATED 13 634 - -
Vra6g1683 666 Gene3D Transferase(Phosphotransferase) domain 1 429 634 - -
Vra6g1683 666 SUPERFAMILY Protein kinase-like (PK-like) 336 651 IPR011009 -
Vra6g1683 666 Pfam Protein kinase domain 353 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g1683 666 ProSitePatterns Legume lectins beta-chain signature. 148 154 IPR019825 -
Vra6g1683 666 CDD lectin_legume_LecRK_Arcelin_ConA 29 262 IPR001220 GO:0030246
Vra6g1683 666 ProSitePatterns Legume lectins alpha-chain signature. 232 241 IPR000985 -
Vra6g1683 666 Gene3D Phosphorylase Kinase; domain 1 323 428 - -
Vra6g1683 666 ProSiteProfiles Protein kinase domain profile. 352 636 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g1683 666 Pfam Legume lectin domain 28 269 IPR001220 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1683 Vra-Chr6 32870207 32872679 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1683 8 632 Receptor kinase-like Gene Family AT5G10530 43.780 2.95e-173 507
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vra6g1683 Pkinase 1.8e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1683 - - vra:106763732 1136.32