Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1679 ATGGGAACAAATCTCAGCACTCCCAAAACTGAAAAGTCTTCCGATGATGGAGAAAATGATCATCTTAGATATGGTTTATCATCAATGCAAGGCTGGCGTGCATCAATGGAAGATGCACATGCTGCACATCTTGATCTGGACGAATCCACTTCCTTTTTTGGAGTTTATGATGGTCATGGAGGTAAGGTGGTTGCCAAGTTTTGTGCTAAGTATCTTCACCAACAGGTGGTCAAGAGTGAAGCATATATAGCTGGAGATATAGGAACCTCTCTTCGGGAATCATTTTTCAGGATGGATGAGATGATGCGTGGTCAAAGGGGCTGGAGGGAATTGGCAATTTTGGGTGATAAGATAAACAAGTTCAATGGTAAGATAGAAGGATTGATTTGGTCTCCACGAAGCAGAGAATATAAGGCTCAAGAGGATAGTTGGGCCTTTGAGGAGGGTCCTCATTCTAATTTTGCTGGACCAACTTCAGGAAGCACTGCCTGTGTTGCAGTTATTAGAAACAACCAACTTTTTGTAGCAAATGCTGGTGATTCACGTTGTGTAATATGTAGGAAGGGTCAGGCGTACGATTTGTCTATAGATCATAAACCTGATCTTGATACTGAGAAGGAAAGAATCATAAAAGCCGGTGGTTTTATTCATGCTGGAAGAGTTAATGGGAGTTTAAGCCTTGCAAGAGCTATAGGTGACATGGAGTTTAAGCAGAATAGATTCCTTCCTGCTGAAAAACAAATGGTGACAGCCAATCCAGACATAAATACTATTGAACTTTCTGATGAAGATGAATTTATAGTGCTAGCTTGTGATGGCATATGGGATTGCTTGTCAAGCCAGCAATTGGTTGATTTCGTACGCCAACAACTTCTCATTGAAACAAAACTTTCTGCGGTTTGTGAAAGAGTGCTGGATCGATGTTTGGCACCAACAATAGGTATTGGTGATGGATGTGATAACATGACCATGATTTTAGTGCAGTTAAAAAAACTGAGGCAGTCCAGTGCACCAACATAA 1020 0.4118 MGTNLSTPKTEKSSDDGENDHLRYGLSSMQGWRASMEDAHAAHLDLDESTSFFGVYDGHGGKVVAKFCAKYLHQQVVKSEAYIAGDIGTSLRESFFRMDEMMRGQRGWRELAILGDKINKFNGKIEGLIWSPRSREYKAQEDSWAFEEGPHSNFAGPTSGSTACVAVIRNNQLFVANAGDSRCVICRKGQAYDLSIDHKPDLDTEKERIIKAGGFIHAGRVNGSLSLARAIGDMEFKQNRFLPAEKQMVTANPDINTIELSDEDEFIVLACDGIWDCLSSQQLVDFVRQQLLIETKLSAVCERVLDRCLAPTIGIGDGCDNMTMILVQLKKLRQSSAPT* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1679 339 ProSiteProfiles PPM-type phosphatase domain profile. 23 329 IPR001932 -
Vra6g1679 339 SMART PP2C_4 13 327 IPR001932 -
Vra6g1679 339 PANTHER PROTEIN PHOSPHATASE 2C 60 ISOFORM X1-RELATED 1 335 - -
Vra6g1679 339 Gene3D - 1 330 IPR036457 -
Vra6g1679 339 MobiDBLite consensus disorder prediction 1 20 - -
Vra6g1679 339 ProSitePatterns PPM-type phosphatase domain signature. 52 60 IPR000222 GO:0043169
Vra6g1679 339 PANTHER PROTEIN PHOSPHATASE 2C 1 335 IPR015655 GO:0004722|GO:0006470
Vra6g1679 339 CDD PP2Cc 23 329 IPR001932 -
Vra6g1679 339 SMART PP2C_SIG_2 28 329 IPR001932 -
Vra6g1679 339 SUPERFAMILY PP2C-like 4 331 IPR036457 -
Vra6g1679 339 Pfam Protein phosphatase 2C 23 103 IPR001932 -
Vra6g1679 339 Pfam Protein phosphatase 2C 141 311 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1679 Vra-Chr6 32821422 32827302 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1679 1 335 PP2C-type Phosphatase Gene Family AT2G25070 75.522 0.0 551
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1679 K17499 - gmx:100793667 644.039
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1679 6 32821422 32827302 Vra6g1679 6 32821422 32827302 ECH
Vra6g1679 6 32821422 32827302 Vra5g1307 5 19985140 19992692 PCT