Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1676 ATGGCTGTTTTTTCTTCAGTTTCTTCATCTCTTTTGCTTACCTTCTTCCTCCTCTTCGGTCTCTCTGTAGCTAGGGAAATACTGGTAGGAGGTAAGACTGATGCTTGGAGGGTTCCAGCTTCTGAATCAGACGCACTTAACCAATGGGCCGAAAGGTCTCGTTTCCAAGTTGGCGACTTTCTTGTTTGGAAATACGATGGTGGGAAAGACTCAGTTTTGCAAGTGAGCAGAGAGGAGTATGTAAACTGCAGCATCTCAAACCCTATAAAGGTGTACAGTGATGGAACGACGAAGGTGAAGCTTGACCGTCCTGGGCCATTCTACTTCATCAGTGGGGCAAAGGGTCACTGTGAGAAGGGTCAGAAGCTTGTGGTGGTGGTTTTGACTCCAAGGGGAAGGTCCAGTGGCATTGTTTCTTCACCAGCACCTGCTCCTGCACCTTCTTTTGCTGAGTTTGAAGGTCCTGCTGTTGCGCCTACTAGCAGTGCCAATGCTTTGCATGGGGGCATTGTCATGGTGGCTCTGGTTGCTATGTGGGGACTTTTTATGTAA 552 0.4837 MAVFSSVSSSLLLTFFLLFGLSVAREILVGGKTDAWRVPASESDALNQWAERSRFQVGDFLVWKYDGGKDSVLQVSREEYVNCSISNPIKVYSDGTTKVKLDRPGPFYFISGAKGHCEKGQKLVVVVLTPRGRSSGIVSSPAPAPAPSFAEFEGPAVAPTSSANALHGGIVMVALVAMWGLFM* 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1676 183 PANTHER EARLY NODULIN-LIKE PROTEIN 3 8 149 - -
Vra6g1676 183 Pfam Plastocyanin-like domain 36 121 IPR003245 GO:0009055
Vra6g1676 183 SUPERFAMILY Cupredoxins 24 128 IPR008972 -
Vra6g1676 183 ProSiteProfiles Phytocyanin domain profile. 25 129 IPR003245 GO:0009055
Vra6g1676 183 PANTHER BLUE COPPER PROTEIN 8 149 IPR039391 GO:0009055
Vra6g1676 183 CDD OsENODL1_like 25 128 IPR041846 -
Vra6g1676 183 Gene3D - 23 131 IPR008972 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1676 Vra-Chr6 32796537 32797712 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1676 8 183 Phytocyanin Superfamily AT4G31840 51.366 3.91e-61 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1676 - - gmx:100527857 266.544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1676 6 32796537 32797712 Vra6g1676 6 32796537 32797712 ECH
Vra6g1676 6 32796537 32797712 Vra5g1304 5 19971697 19972817 PCT