Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1669 ATGCTCGTTCAAGTCCTCAACACAGCAGTCATAATGGATGTAAAGGTGGAAACTCTTAAATCTGAGTTAAAGAGAGTGAGAGAGGAGAATAAAACTCTAAGAGTGATGTTTGAAGTTCTAAGCAGCAAGTACACAAAGCTTGAGTCCCATCTTCAAGAGATAAACAAGGAACAAGACAAGGGCATGAGTTCAAATCAAATAGGATCAGTAACCGAACCTATCTTGGATGTGAACAAGAGACGGAGACTAGAGTTTCACACAGCAAAAAAACCACTACAAATCTTTGTCAGAACACATCCCATGGATGATAGTTTGATAGTAAAAGATGGATATCAGTGGAGAAAGTATGGACAAAAGGTCACCAAAGACAATGCTTCACCAAGAGCTTACTTTAGGTGCTCCATGGCTCCCATTTGCCCAGCCAAAAAGAAGGTGCAAAGATGTTTACATGATAAGTCTATCCTTGTTGCAACTTATGATGGAGAGCACAACCATGGTGCTCTTCATGAGCCATCTTCATCCACACCTAGAGGCTCATCAGTGGCCAACCAGTTGCCTAGCGTAGCAAATGACAAAGCAATGAACATTTTGGCTCTTTCTGGATTGTCTCAAACAGATAGAAGACATGGCGAAGAAGTAATTCATCAACATAACTATGACACCAACATCAAAGTTGAAGAATATGTAAGTTCTCTAATCAAGGATCCTGACTTCACCATGTCATTAGCTGAAGCAGTTGCCCGCACCATCACTGGCGAGCTCAAGCAGCAAGATCTAAACCTCAATTTGAATATTCCCGAAGAGTGA 807 0.4126 MLVQVLNTAVIMDVKVETLKSELKRVREENKTLRVMFEVLSSKYTKLESHLQEINKEQDKGMSSNQIGSVTEPILDVNKRRRLEFHTAKKPLQIFVRTHPMDDSLIVKDGYQWRKYGQKVTKDNASPRAYFRCSMAPICPAKKKVQRCLHDKSILVATYDGEHNHGALHEPSSSTPRGSSVANQLPSVANDKAMNILALSGLSQTDRRHGEEVIHQHNYDTNIKVEEYVSSLIKDPDFTMSLAEAVARTITGELKQQDLNLNLNIPEE* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1669 268 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 12 250 IPR044810 GO:0003700
Vra6g1669 268 SUPERFAMILY WRKY DNA-binding domain 101 166 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vra6g1669 268 Pfam WRKY DNA -binding domain 108 165 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra6g1669 268 SMART WRKY_cls 107 167 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra6g1669 268 Coils Coil 16 57 - -
Vra6g1669 268 PANTHER WRKY TRANSCRIPTION FACTOR 49 12 250 - -
Vra6g1669 268 Gene3D WRKY domain 93 167 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vra6g1669 268 ProSiteProfiles WRKY domain profile. 102 168 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1669 Vra-Chr6 32662104 32664336 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1669 1 258 WRKY Transcription Factor Family AT1G80840 36.242 1.80e-44 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vra6g1669 WRKY 2.6e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1669 - - gmx:100170679 411.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1669 6 32662104 32664336 Vra5g1296 5 19895897 19897473 PCT