Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1668 ATGGAACCAACATGCTTGGATACTTCACTCAATCTCAACGTTGATCCTTCTTCTGTTCACACGGATATGGTGTTGGAGGAAGAGTTGCAGAGGCTGAGACGTGAGAACAAGAGGTTGACTGAGATGTTGACCCACTTGTGTGACGGCTACATGGTTTTGCAGAAGCAATTGACCCAATTGAAGAACACAAATTTTGAGCAAGACCAACTCGAATCACGCAAGAGAAAAGCAGTTAACAATAACAATGGCGAGTGCAGCTCCATAACAGAGGATTCCTTCAAAAGGTACAGCTACAAGGATTTCAGCTCCTCCCCAAAGGTTTCCAAGGTTCTTGTAAAGACACAAGCTTCTAATAACAGTTTATATGTGATGGATGGATATCAATGGAGGAAATACGGTCAAAAGGTGACCAGGGATAACCCTTCTCCTAGAGCTTACTTCAAGTGTTCCTTTGCTCCAAGCTGCCCCGTTAAAAAAAAGGTGCAAAGGAGTTTAGAAGACCCTACAATACTTGTTACAACATATGAAGGAGAGCATAATCATGGTAATGAAAGAGGTGAAATTGAAGGAGGAAAAGGGTCAAGTCCAGTTTCTTCACCAAAAGCCAGAATTGGAAGTGTAACGCTTGATTTGGTCAAATCAGGATTGTTTGAAACTGCCCAAAAGTCATCTATCCAACAATTTTTGGTTCAACAAATGGCTACTTCTTTGACAAGGGATCCCAATTTCACCACAGCACTTGCCACTGCCATTTCAGGAAAAATTCTAGAAGCCAAATGGTGA 783 0.4189 MEPTCLDTSLNLNVDPSSVHTDMVLEEELQRLRRENKRLTEMLTHLCDGYMVLQKQLTQLKNTNFEQDQLESRKRKAVNNNNGECSSITEDSFKRYSYKDFSSSPKVSKVLVKTQASNNSLYVMDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSLEDPTILVTTYEGEHNHGNERGEIEGGKGSSPVSSPKARIGSVTLDLVKSGLFETAQKSSIQQFLVQQMATSLTRDPNFTTALATAISGKILEAKW* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1668 260 SUPERFAMILY WRKY DNA-binding domain 121 182 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vra6g1668 260 SMART WRKY_cls 123 183 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra6g1668 260 Gene3D WRKY domain 105 183 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vra6g1668 260 PANTHER WRKY FAMILY TRANSCRIPTION FACTOR-RELATED 11 258 - -
Vra6g1668 260 Pfam WRKY DNA -binding domain 125 181 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra6g1668 260 Coils Coil 22 42 - -
Vra6g1668 260 MobiDBLite consensus disorder prediction 179 201 - -
Vra6g1668 260 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 11 258 IPR044810 GO:0003700
Vra6g1668 260 ProSiteProfiles WRKY domain profile. 118 184 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1668 Vra-Chr6 32640949 32642471 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1668 6 257 WRKY Transcription Factor Family AT1G80840 44.138 4.47e-71 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vra6g1668 WRKY 7.8e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1668 - - gmx:100810978 370.548