Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1659 ATGAGGTTAGAGAGAACATTGTTGGTGGTATTGCTACTTATTCTACTCCACCATATTTCTGCTACCAAGGACCACCAACAACACCGTTGTCCACCTTCTTCCTGTGGTAACATCACAAACATCACTTATCCATTTCGATTACAAGGCGACCCAGAGAATTGTGGTGACGAAAGGTACGAGCTTGGTTGTCAGAATAATGTTGCTGTGTTGTATCTGAACTCTACACAATACCATGTTCAAGCAATAAACTACGACAACTACACCGTGAGAGTGGTTGACCCTGCACTTCAACACCACAACTGCTCCTCCCTTCCTCTCCGTTCCCTTTCTCGCTCCAATTTCTCTGATACTTACACTGATTCTGGGGATCTATACCAAGCCGGTCTATATCCGAATTTTAATTGGGAATCTCTGAGTTTCGAGCATATACTGTTTTTGAACTGTAACCATTCGGTGAGAGAGAACGGGAAGTATGTGGAAAGTGGTGAGTGCGTGAAGTGGGACTCAAAAGGCTATGCATATGCAGTGGATGGAGACCTAAAAGCTGAGGACTTAGAAGTTGGCTGTGACGTCAAGCTTGTTGCTCCCACATCGTTCAGGACTTTCAATAAGCATTCATACGCTGCCATTCACAGGGCTCTCGCCTATGGATTTGAGATCTCTTGGGTAAACCTCGCCTGTCAGAATCATTGTCCTGAAGGTTTTTGCTATTTCGACTCTTCTAGCCAGAAGCTTATGCAGATTTTGCATTTTGATATTAAACCCCATAACATCTTATTGGATGACAACTTCATCCCAAAGATTTCTGACTTTGGATTAGCAAAGTTATATCCAATAGATAATAGCATTGTCACAATGACAGCAGCAAGAGGAACCATTGGATATATGGCTCCAGAATTGTTTTACAATAATATTGGAGGAATATCCCACAAAGCTGATGTCTATAGTTTCGGAATGTTGTTGATGGAGATGGCAAGCAAGAGGAAGAATCTAAATCCCCATGCAGAACACTCAAGTCAACTTTATTTTCCCCTTTGGATATATAATCATATTACANAAGAGGAAGATATAGATATAAAGGATTTGAGCGAAGAGGAAAAGCTAATAGTAAAGAAAATGATAATAGTTGCACTTTGGTGTATACAGTTAAAACCAAAGGATCGTCCATCAATGAATAGAGTAGTAGAAATGCTTGAAGGAGACATTGAAGATTTGGAAATACCTCCAAAACCTACTTTATTTCCTGATGAAATGAGTTTAGAAGATCAAANCGCCAGTTCTATCTAA 1287 0.4025 MRLERTLLVVLLLILLHHISATKDHQQHRCPPSSCGNITNITYPFRLQGDPENCGDERYELGCQNNVAVLYLNSTQYHVQAINYDNYTVRVVDPALQHHNCSSLPLRSLSRSNFSDTYTDSGDLYQAGLYPNFNWESLSFEHILFLNCNHSVRENGKYVESGECVKWDSKGYAYAVDGDLKAEDLEVGCDVKLVAPTSFRTFNKHSYAAIHRALAYGFEISWVNLACQNHCPEGFCYFDSSSQKLMQILHFDIKPHNILLDDNFIPKISDFGLAKLYPIDNSIVTMTAARGTIGYMAPELFYNNIGGISHKADVYSFGMLLMEMASKRKNLNPHAEHSSQLYFPLWIYNHITXEEDIDIKDLSEEEKLIVKKMIIVALWCIQLKPKDRPSMNRVVEMLEGDIEDLEIPPKPTLFPDEMSLEDQXASSI* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1659 428 PANTHER RUST RESISTANCE KINASE LR10-RELATED 246 419 IPR045874 GO:0004672
Vra6g1659 428 PANTHER RUST RESISTANCE KINASE LR10-RELATED 8 240 IPR045874 GO:0004672
Vra6g1659 428 ProSitePatterns Serine/Threonine protein kinases active-site signature. 248 260 IPR008271 GO:0004672|GO:0006468
Vra6g1659 428 SUPERFAMILY Protein kinase-like (PK-like) 246 399 IPR011009 -
Vra6g1659 428 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 8 240 - -
Vra6g1659 428 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 246 419 - -
Vra6g1659 428 ProSiteProfiles Protein kinase domain profile. 55 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g1659 428 Pfam Wall-associated receptor kinase galacturonan-binding 30 93 IPR025287 GO:0030247
Vra6g1659 428 Gene3D Transferase(Phosphotransferase) domain 1 227 410 - -
Vra6g1659 428 Pfam Protein kinase domain 246 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g1659 428 SMART serkin_6 153 398 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1659 Vra-Chr6 32413324 32418892 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1659 245 427 Receptor kinase-like Gene Family AT5G38280 47.059 1.01e-54 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vra6g1659 Pkinase 1.5e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1659 - - vra:106763727 870.922