Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1658 ATGAGAAACAGTTCGGACATGATGAGGAGAGAGAGAACATTGCTGGTGGTACTGCTACTTATTCTACTCCACCATATTTCTGCTACCAAGGACCACCAACAACACCGTTGTCCACCTTCTTCCTGTGGCAACATCCCCAAAATCAGTTATCCATTTCGATTACAAGGCGACCCAGAGAACTGTGGTGACGAAAGGTACAAGCTTGTTTGTCAGAATAATGTTACTGTGTTGTATCTGAACTCTATACAATACCATGTTCAAGCAATCAACTACGACAACTACACAGTAAGAGTGGTTGACCCTGCACTTCAGCACCACAACTGCTCCTCCCTTCCTCTCCGTTCTCTTTCTCGCTCCAATTTCTCTGATACTTACACTTTCTCCTCGGATCTATACCAAGCCGGTCTAGATTGGTATCGAAATTGGGAATCTCTGAGTTTTGAGCATATAGTGTTTCTGAACTGTAACCATTCGGTGAAAGAGAACGGAAAGTATGTGGAGAGTGGTGAGTGCGTGAAGTGGGACTCAAAGGGCTATGCATATGCAGTGGGTGGAGACCTAAAAGCTGAGGACTTAGAAGTTGGGTGTGACGAAGATGGGAAGGAACAAAGTTTTGGAAAAGAAATCCTTGCAGATATTTCCATTTATGCTTCTATAGTATGGGCCTACAAAATTTTGTTTGGATTGCCATTCCTAATTGTGATTTTCATATGTAAATGGAGGAAAAGACATTCATCAATGTATGAAAATATTGAAAATTACCTTGAACAAAATCACTTAGCACCTATCAGATACTCATACAAGGAAATTAAGAAGATGACTGAAGGTTTCAAAGAGAAGTTAGGTCAAGGAGGATTTGGCTGTGTGTTTAAGGCAAAGTTACGCAGTGGACCTTCTGTGGCAATCAAAATATTAGGTAAAGCCAAAGGAAATGGACAAGATTTTATCAATGAAGTTGCAACTATTGGAAGAATACATCACCAAAATGTGGTTCAATTAATTGGATTTTGTGTTAGTGGCTCNAAGCGCGCTCTTGTTTATGAATTCATGCCCAATGGATCTCTTGATAAATTTATATTTTCAGGAAATGAAAATATAGATTTTAGCTATGAAAAAATATATAAGATATCGATTGGAGTAGCTCGTGGAATTGCTTATCTCCATCATGGNTGTGAGATGCAGATTTTGCATTTTGATATNAAACCCCATAACATCTTATTGGATGANAACTTCATCCCAAANNTTTCTGACTTTGGATTAGCAAAGTTATATCCAATANATAATAGCATTGTNACAATGACAGCAGCAAGAGGAACCATTGGATATATGGCTCCAGAATTGTTTTACAATAATATTGGAGGAATATCNCACAAAGCTGATGTNTATAGTTTNGGAATGTTGTTGATGGAGATGGCNAGCAAGAGGAANAANCTAAATCCCCATGCAGAACACTCAAGTCAACTTTATTTTCCCCTTTGGATATATAATCATATTANANAAGAGGAAGATNTNGATATAAAGGATTTGANCGAAGAGGAAAAGCTAATAGTAAAGAAAATGATAATAGTTGCACTTTGGTGTATACAGTTAAAACCAAAGGATCGTCCATCAATGAATAGAGTAGTGGAAATGCTTGAAGGAGACATTGAAGATTTGGAAATACCTCCAAAACCTACTTTATTTCCTGATGAAATGAGTGTAGGAGATCAAATCGCCAGTTCTATCTAA 1728 0.3738 MRNSSDMMRRERTLLVVLLLILLHHISATKDHQQHRCPPSSCGNIPKISYPFRLQGDPENCGDERYKLVCQNNVTVLYLNSIQYHVQAINYDNYTVRVVDPALQHHNCSSLPLRSLSRSNFSDTYTFSSDLYQAGLDWYRNWESLSFEHIVFLNCNHSVKENGKYVESGECVKWDSKGYAYAVGGDLKAEDLEVGCDEDGKEQSFGKEILADISIYASIVWAYKILFGLPFLIVIFICKWRKRHSSMYENIENYLEQNHLAPIRYSYKEIKKMTEGFKEKLGQGGFGCVFKAKLRSGPSVAIKILGKAKGNGQDFINEVATIGRIHHQNVVQLIGFCVSGSKRALVYEFMPNGSLDKFIFSGNENIDFSYEKIYKISIGVARGIAYLHHGCEMQILHFDXKPHNILLDXNFIPXXSDFGLAKLYPIXNSIVTMTAARGTIGYMAPELFYNNIGGISHKADVYSXGMLLMEMASKRXXLNPHAEHSSQLYFPLWIYNHIXXEEDXDIKDLXEEEKLIVKKMIIVALWCIQLKPKDRPSMNRVVEMLEGDIEDLEIPPKPTLFPDEMSVGDQIASSI* 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1658 575 PANTHER RUST RESISTANCE KINASE LR10-RELATED 219 566 IPR045874 GO:0004672
Vra6g1658 575 PANTHER RUST RESISTANCE KINASE LR10-RELATED 13 197 IPR045874 GO:0004672
Vra6g1658 575 Gene3D Phosphorylase Kinase; domain 1 248 349 - -
Vra6g1658 575 Pfam Wall-associated receptor kinase galacturonan-binding 37 100 IPR025287 GO:0030247
Vra6g1658 575 ProSitePatterns Protein kinases ATP-binding region signature. 281 303 IPR017441 GO:0005524
Vra6g1658 575 Pfam Protein kinase domain 278 543 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g1658 575 Gene3D Transferase(Phosphotransferase) domain 1 350 553 - -
Vra6g1658 575 SUPERFAMILY Protein kinase-like (PK-like) 259 546 IPR011009 -
Vra6g1658 575 ProSiteProfiles Protein kinase domain profile. 275 560 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g1658 575 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 13 197 - -
Vra6g1658 575 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 219 566 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1658 Vra-Chr6 32407400 32411646 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1658 15 560 Receptor kinase-like Gene Family AT5G38260 34.596 2.62e-108 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vra6g1658 Pkinase 3.3e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1658 - - vun:114195573 838.18