Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1657 ATGTGCAGAGAGAGAGCATTCATGGTGGTGGTGCTACTTCTACTCCCCAAAATTCATGGTGGCTGCCCTCCTTCTTCCTGTGGCAACATCACCAACATAACTTATCCCTTTCGATTACAAGCCGACCCAGAGAATTGCGGTGACGAAAGGTACGAGCTTGGTTGTNAGAATAATGTTACTGTGTTGTACCTGAACTCTACACAATACCATATTCAAGCAATCAACTACGACAACTACACCGTGAGAGTGGTTGATCCTGCACTTCAACACCACAACTGCTCCTCCCTTCCTCTCCGTTCTCTCTCTCGCTCCAATTTCTCTGATACTTACACTGACTCCGCCGATCTATACCAAGCCGGTCTATATCTTTATCAAAATTGGGAATCTCTGAGTTTCGAGCATATAGTATTTCTGAACTGTAACCATTCGGTGAGAGAGAACGGGAAGTATACGGAGAATGGTGAGTGCGTGAAGTGGGACTCAAAAGGTTATGCATATGCAGTGGGTGGAGACCTAAAAGCTGAAGACTTAGAAGTAGGGTGTGACGTGAAGCTTGTTGCTCCCACATCGTTCAGGAGTTTCAATAACCATTCATACGCTGCCATTCACAGGGCTCTCGCCTATGGATTTGAGATCTCTTGGATAAAACTCGCCTGTCAGAAGATTTCTTGTACATTCGGGGACGGCTTCTGCTATTTCGACTCTTCTAGACAGAAGCTTCATTATGCTTCTATGGTATGGGCCTACAAAATTTTGTTTGGATTTCCATTCTTAATCGTGATTTTCATATCTAAATGGAGGAAAAGACATGCATCAATGTATCAAAATATTGAAAATTATCTTGAACAGTATAATATGGCACCGATTAGATACTCATACAAGGAAATTAAGAAGATGGCCGGAGGTTTCAAAGACAAGTTAGGTGAAGGAGGATTTGGTTCTGTCTTTAAGGCAAAGTTATGCAGTGGACCTTGTGTGGCAATCAAAATGTTAGATAAATCTAAAGGAAATGGACAAGATTTTATTAGCGAAGTTGCAACAATTGGAAGAATACATCATCAAAATGTGGTACAATTAATTGGATTTTGTGTTCATGGCTCAAAGCGTTATATTGTGTATGAATTCATGTCCAATGGATCTCTTGATAAATTTATTTTTTCAAAGGATGAGAGTGTACATTTAAGTTATGAAAAAATATATAATATATCAATTGAAGTGGCTCGCGGAATAGCTTATCTCCACCATGGTTGTGAGATGAAGATTTTGCATTTTGATATCAAACCCCACAACATCCTCCTTGATGAAAACTTTCTCCCCAAGATCTCTGACTTTGGATTGGCAAAGTTATATTCAATAGATAACAGTATTATTCCAATGACTGCAGCAAGAGGAACCATTGGATATATGGCTCCAGAATTGTTTTATAATAATATTGGAGGAATATCCAATAAGGCTGATGTTTATAGTTTTGGAATGCTCTTGATGGAGATGGCAAGTAAGAGAAAGAATCTTAACCCCTATGCTGAACATTCAAGTCAACTTTACTTTCCTCTTTGGATTTATAATCACATTAGAGAAGAGGAAATTACTGAAATGGAAGAATTGACAAAGGATGAAAAGACAATAGTAAAGAAGATGATTATAGTGGCACTATGGTGTATACAGTTGAAACCAAATGATCGCCCCTCAATGAATAAAGTAGTGGAAATGCTTGAAGGAGACATTGAAGACTTAGAAATGCCTCCAAAACCTATTCTATATCCAGATGAAACAGTGACAGAGGATCAAACAATAAACTCCAACTAG 1806 0.3876 MCRERAFMVVVLLLLPKIHGGCPPSSCGNITNITYPFRLQADPENCGDERYELGCXNNVTVLYLNSTQYHIQAINYDNYTVRVVDPALQHHNCSSLPLRSLSRSNFSDTYTDSADLYQAGLYLYQNWESLSFEHIVFLNCNHSVRENGKYTENGECVKWDSKGYAYAVGGDLKAEDLEVGCDVKLVAPTSFRSFNNHSYAAIHRALAYGFEISWIKLACQKISCTFGDGFCYFDSSRQKLHYASMVWAYKILFGFPFLIVIFISKWRKRHASMYQNIENYLEQYNMAPIRYSYKEIKKMAGGFKDKLGEGGFGSVFKAKLCSGPCVAIKMLDKSKGNGQDFISEVATIGRIHHQNVVQLIGFCVHGSKRYIVYEFMSNGSLDKFIFSKDESVHLSYEKIYNISIEVARGIAYLHHGCEMKILHFDIKPHNILLDENFLPKISDFGLAKLYSIDNSIIPMTAARGTIGYMAPELFYNNIGGISNKADVYSFGMLLMEMASKRKNLNPYAEHSSQLYFPLWIYNHIREEEITEMEELTKDEKTIVKKMIIVALWCIQLKPNDRPSMNKVVEMLEGDIEDLEMPPKPILYPDETVTEDQTINSN* 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1657 601 ProSiteProfiles Protein kinase domain profile. 301 586 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g1657 601 SUPERFAMILY Protein kinase-like (PK-like) 284 572 IPR011009 -
Vra6g1657 601 ProSitePatterns Serine/Threonine protein kinases active-site signature. 421 433 IPR008271 GO:0004672|GO:0006468
Vra6g1657 601 Gene3D Phosphorylase Kinase; domain 1 263 375 - -
Vra6g1657 601 SMART serkin_6 301 571 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g1657 601 ProSitePatterns Protein kinases ATP-binding region signature. 307 329 IPR017441 GO:0005524
Vra6g1657 601 Gene3D Transferase(Phosphotransferase) domain 1 376 580 - -
Vra6g1657 601 MobiDBLite consensus disorder prediction 582 601 - -
Vra6g1657 601 Pfam Wall-associated receptor kinase galacturonan-binding 22 85 IPR025287 GO:0030247
Vra6g1657 601 Pfam Protein kinase domain 304 569 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g1657 601 PANTHER RUST RESISTANCE KINASE LR10-RELATED 247 595 IPR045874 GO:0004672
Vra6g1657 601 PANTHER RUST RESISTANCE KINASE LR10-RELATED 15 227 IPR045874 GO:0004672
Vra6g1657 601 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 247 595 - -
Vra6g1657 601 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 15 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1657 Vra-Chr6 32403243 32405594 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1657 22 587 Receptor kinase-like Gene Family AT5G38260 35.678 1.42e-112 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vra6g1657 Pkinase 2.6e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1657 - - vun:114195573 924.85