Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1656 ATGAGGTTCGAGAGAACATTGTTGGTGGTATTGCTACTTATTCTACTCCACCATATTTCTGCTACCAAGGACCACCAAGAACACCGTTGTCCACCTTCTTCCTGTGGTAACATCACCAACATCACTTATCCTTTTCGATTACAAGGCGACCCAGAGAGCTGCGGTGACAAAAGGTACGAACTTGGTTGTGAGAATAATGTTACTGTGTTGTATCTGAACTCTACAGAATACCATGTTCAAGCAATCAACTACGACAACTACACCGTGAGAGTGGTTGACCCTGCACTTCAACACCACAACTGCTCCTCCCTTCCTCTCCGTTCCCTTTCTCGCTCCAATTTCTCTGATACTTACACTGATTCTGGGGATCTATACCAAGCCGGTCTATATCCGAATTTTAATTGGGAATCTCTGAGTTTCGAGCATATAGTGTTTCTGAACTGTAACCATTCAGAGAGAGAGAATGGGAAGTATGTGAAGAGTGGTGAGTGCGTGAAGTGGGACTCAAAGGGCTATGCATATGCTGTGGTTGGTGACCTAAAAGCTGAGGACTTAGAAGTTGGGTGTGACGTGAAGCTTGTTGCTCCCACATCGTTCAGGACTTTCAATAACCATTCCTACGCTGCCATTCACAGTGCTCTCGCCCATGGATTTGAGATTTCTTGGATAAATCTCGCCTGTCAGAATCATTGTCCTAAAGGTTTTTGCTATTTCGACTCTTCTAGTATTGTCATTTCGGCATGGGCCTACAAAATTTTGTTTGGATTGCCATTTTTAATTGTGATTTTCATATGTAAATGGAGGAAAAGACATGCATCAATGTATCAAAATATTGAAANTTACCTTCAACAAAATCACTTAGCACCTATCAGATACTCATACGAGGAAATTAAGAAGATGACCGGAAGTTTTAAAGAGAAGTTAGGTGAAGGAGGATTTGGCTCTGTGTTTAAGGCAAAGTTGCGCAGTGGACCTTTTGTGGCAATCAAAATGTTAGGTAAAGCCAAAGGAAATGGACAAGATTTTATCAATGAAGTTGCAACTATTGGAAGAATACATCACCAAAATGTGGTTCAATTAATTGGATTTTCTGTTAGTGGCTCAAAGCGCGCTCTTGTTTATGAATTCATGCTCAATGGATCTCTTGATAAATTT 1155 0.4104 MRFERTLLVVLLLILLHHISATKDHQEHRCPPSSCGNITNITYPFRLQGDPESCGDKRYELGCENNVTVLYLNSTEYHVQAINYDNYTVRVVDPALQHHNCSSLPLRSLSRSNFSDTYTDSGDLYQAGLYPNFNWESLSFEHIVFLNCNHSERENGKYVKSGECVKWDSKGYAYAVVGDLKAEDLEVGCDVKLVAPTSFRTFNNHSYAAIHSALAHGFEISWINLACQNHCPKGFCYFDSSSIVISAWAYKILFGLPFLIVIFICKWRKRHASMYQNIEXYLQQNHLAPIRYSYEEIKKMTGSFKEKLGEGGFGSVFKAKLRSGPFVAIKMLGKAKGNGQDFINEVATIGRIHHQNVVQLIGFSVSGSKRALVYEFMLNGSLDKF 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1656 385 ProSiteProfiles Protein kinase domain profile. 302 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g1656 385 PANTHER RUST RESISTANCE KINASE LR10-RELATED 249 385 IPR045874 GO:0004672
Vra6g1656 385 PANTHER RUST RESISTANCE KINASE LR10-RELATED 8 240 IPR045874 GO:0004672
Vra6g1656 385 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 8 240 - -
Vra6g1656 385 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 249 385 - -
Vra6g1656 385 Pfam Wall-associated receptor kinase galacturonan-binding 30 93 IPR025287 GO:0030247
Vra6g1656 385 Pfam Protein tyrosine and serine/threonine kinase 304 385 IPR001245 GO:0004672|GO:0006468
Vra6g1656 385 SUPERFAMILY Protein kinase-like (PK-like) 288 384 IPR011009 -
Vra6g1656 385 Gene3D Phosphorylase Kinase; domain 1 276 376 - -
Vra6g1656 385 ProSitePatterns Protein kinases ATP-binding region signature. 308 330 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1656 Vra-Chr6 32386907 32391699 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1656 8 385 Receptor kinase-like Gene Family AT5G38260 29.073 2.25e-39 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vra6g1656 PK_Tyr_Ser-Thr 2.8e-14 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1656 - - vra:106764539 785.408