Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1655 ATGAGGAGAGAGAGAACATTATTGGTGGTACTGCTACTTATTCTACTTCACCATATTTCTGCTACCAAGGACCACCAAGAACACCTTTGTCCCCGTTCTTCTTGTGGCTACATCACCAACATCACTTATCCTTTTCGATTACAAGGCGACCCAGAGAATTGTGGTGACGAAAGGTACGAGCTTGGTTGTCAGAATAATGTTACTGTGTTGTATCTGAACTCTACAGAATACCATGTTCAAGCAATCAACTACGACAACTACACCGTGAGAGTTGTTGACCCTGCACTTCAACACCACAACTGCTCCTCCCTTCCTCTCCGTTCCCTCTCTCGCTCCAATTTCTCTGATACTTACACATACCGCACGGGTCCATACCAAGCCGGTCTAGATCCAGATAGTAATTTGGAATATCTGAGTTTCGAGCATATAGTGTTTCTGAACTGTAACCATTCGGTGAGAGAGAACAGAAAGTATGTGGAGAGTGGTGAGTGTGTGAAGTGGGAGTCCAATGGTTATGCATATGCAGTGGGTGGAGACCTAAAAGCTGAGGACTTAGAAGTTGGGTGTGACGTGAAGCTTGTTGCTCCCACATCGTTCAGAACTTTCAATAAGCATTCATACGCTGCCATTCACAGGGCTCTCGCCTATGGATTTGAGATCTCTTGGGTAAACCTCGCCTGTCAGAAGGTTTCTTGTTCATTCGGCTTCTGCTATTTCGACTCTTCTAGCCAGAAGCTTGNTTGCGATCCANCTGGGTTAAGGATATTACTGTGGTTAGCTGGTATTTCCTTTTATGCTTCTATCGTATGGGCCTACAAAATTTTGTTTGGATTGCCATTCTTAATTGTGATTTTCATATGTAAATGGAGGAAAAGACATTCATCAATGTATGAAAATATTGAAAATTACCTTGAACAAAATCACTTAGCACCTATCCGATACTCATACAAGGAAATTAAGAAGATGACTGAAGGTTTCAAAGAGAAGTTAGGTCAAGGAGGATTTGGCTCTGTGTTTAAGGCAAAGTTACGGAGTGGACCTTTTGTGGCAATCAAAATGTTAGGTAAAACCAAAGGAAATGGACAAGATTTTATCAATGAAGTTGCAACCATTGGAAGAATACATCACCAAAATGTGGTACAATTAATTGGATTTTGTGTTAGTGGCTCAAAGCGAGCTCTTGTTTATGATTTCATGCCCAATGGATCTCTTGATAAATTTATATTTTCAAGAAATGAAAATATAGATTTTAGCTATGAAAAAATATATAAGATATCGATTGGAGTAGCTCGTGGAATTGCTTATCTCCATCATGGGTGTGAGATGCAGATTTTGCATTTTGATATCAAACCCCATAACATCTTATTGGATGAAAACTTCATCCCAAAGGTTTCTGACTTTGGATTAGCAAAGTTATATCCAATAGATAATAGCTTTGTCCCAATGACAGCAGCAAGAGGAACCATCGGATACATGGCTCCAGAATTGTTTTACAATAATATTGGAGGAATATCCCACAAAGCTGATGTTTATAGTTTCGGAATGTTGTTGATGGAGATGGCAAGCAAGAGGAAGAATCTAAATCCCCATGCAGAACACTCAAGTCAACTTTATTTTCCCCTTTGGATATATAATCATATTAGAGAAGAGGAAGATATAGATATAAAGGATTTGAGCGAAGAGGAAAAACTAATAGTAAAGAAAATGATCATAGTTGCTCTTTGGTGTATACAGTTAAAACCAAAGGATCGTCCATCAATGAATAGAGTAGTGGAAATGCTTGAAGGAGACATTAAAGATTTGGAAATACCTCCAAAACCTACTTTATTTCCTGATGAAATGAGTTTAGAGGATCAAACCGCCAGTTCTATCTAA 1875 0.3899 MRRERTLLVVLLLILLHHISATKDHQEHLCPRSSCGYITNITYPFRLQGDPENCGDERYELGCQNNVTVLYLNSTEYHVQAINYDNYTVRVVDPALQHHNCSSLPLRSLSRSNFSDTYTYRTGPYQAGLDPDSNLEYLSFEHIVFLNCNHSVRENRKYVESGECVKWESNGYAYAVGGDLKAEDLEVGCDVKLVAPTSFRTFNKHSYAAIHRALAYGFEISWVNLACQKVSCSFGFCYFDSSSQKLXCDPXGLRILLWLAGISFYASIVWAYKILFGLPFLIVIFICKWRKRHSSMYENIENYLEQNHLAPIRYSYKEIKKMTEGFKEKLGQGGFGSVFKAKLRSGPFVAIKMLGKTKGNGQDFINEVATIGRIHHQNVVQLIGFCVSGSKRALVYDFMPNGSLDKFIFSRNENIDFSYEKIYKISIGVARGIAYLHHGCEMQILHFDIKPHNILLDENFIPKVSDFGLAKLYPIDNSFVPMTAARGTIGYMAPELFYNNIGGISHKADVYSFGMLLMEMASKRKNLNPHAEHSSQLYFPLWIYNHIREEEDIDIKDLSEEEKLIVKKMIIVALWCIQLKPKDRPSMNRVVEMLEGDIKDLEIPPKPTLFPDEMSLEDQTASSI* 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1655 624 ProSitePatterns Serine/Threonine protein kinases active-site signature. 444 456 IPR008271 GO:0004672|GO:0006468
Vra6g1655 624 SUPERFAMILY Protein kinase-like (PK-like) 308 595 IPR011009 -
Vra6g1655 624 Pfam Wall-associated receptor kinase galacturonan-binding 30 93 IPR025287 GO:0030247
Vra6g1655 624 Pfam Protein kinase domain 327 592 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g1655 624 SMART serkin_6 324 594 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g1655 624 PANTHER RUST RESISTANCE KINASE LR10-RELATED 8 244 IPR045874 GO:0004672
Vra6g1655 624 PANTHER RUST RESISTANCE KINASE LR10-RELATED 268 615 IPR045874 GO:0004672
Vra6g1655 624 Gene3D Phosphorylase Kinase; domain 1 297 398 - -
Vra6g1655 624 ProSitePatterns Protein kinases ATP-binding region signature. 330 352 IPR017441 GO:0005524
Vra6g1655 624 ProSiteProfiles Protein kinase domain profile. 324 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g1655 624 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 8 244 - -
Vra6g1655 624 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 268 615 - -
Vra6g1655 624 Gene3D Transferase(Phosphotransferase) domain 1 399 602 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1655 Vra-Chr6 32368569 32372580 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1655 8 609 Receptor kinase-like Gene Family AT5G38260 35.968 2.27e-120 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vra6g1655 Pkinase 1.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1655 - - vun:114195573 971.844