Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1645 ATGTGGAGAGAGAGAGCATTGTTCCTCGTACTGCTACTTCTAGTCCACCATATTTGTGCAACCAACAAAAAACAACTTTGTCTCCCTTCTTCCTGTGGCAATATCACCCACATCTCTTATCCCTTTCGATTACAAGGTGACCCAGAGAATTGTGGTGACGAAAGGTACGAGCTTGGTTGTCAGAATAATGTTACGGTGTTGTATCTGCACTCTGCACAATATCATGTGCAGGCAATAAACTACAACAAATACAAAGTGAGAGTGGTTGATCCTGCACTTCAACTCCATAACTGCTCCTCCCTTCCTCTCCGTTCCCTCTCTCGCTCCAATTTCTCTGATACTTACACGAACAACATGGGTCCATACCAAGCCGGTCTACGTCCGGATCGTAATTGGGAATATCTGAGTTTCGAGCATATAGTGTTTCTGAACTGTAACCATTCGGTGAGAGAGAACGGAAAGTATGTGGAGAGTGGTGAGTGCGTGAAGTGGGAGTCCAATGGTTATGCATATGCAGTGGGTGGAGACCTAAAAGCTGAGGACTTAGAAGTTGGGTGTGACGTGAAGCTTGTTGCTCCCACATCGTTCAGGACTTTCAATAACCATTCCTACGCTGCCATTCACATGGCTCTCGCCTATGGATTTGAGATCTCTTGGATAAAACTCGCCTGTAAGAAGCATCACTGTCGATTCGGCTTCTGCTATTTCAACCGTTCTAGACAGAAGCTTCAATGCTCATTGGGTTTACTGGATATGCTGGCAGCATTTAGCATATTGGGCTTTAAGGCATGGGCTTGCATCAGAGCTTTGTTTGGACTACTACTTATTGTTGCACTCTTGATATGCAAATGGCGGAAAAGACATGCATCAATGTATCAAAATATTGAAAATTACCTTGGACAAAATAATTTCGCGCCTATTAGATACTCATTCAGCGATATTAAGAAGATGGCTGGAGGTTTTAAAGAGAAATTAGGTGAAGGAGGATTTGGCTCTATCTTTAAGGGAAAGTTGCGCACTGGATCTTCTGTGGCAATCAAAATATTAGATAAATCTAAAGGGAAAGGACAAGATTTTATCAGTGAAGTTGCAATCATAGGAAAAATACATCATCAAAATGTGGTACAGTTAATTGGGTTTTGTGTTCATGGCTCAAAGCGTTATCTTGTGTATGAATTCATGCCTAATGGATCTCTCGACAAATTTATTTTTTCAACAGACAGAAGTGGCCATTTAACCTATGAAAGAATATATAATATATCAGTGGGAGTGGCTCGAGGGATTGCTTATCTCCATCATGGGTGTGAGATGAAGATTTTGCATTTTGATATTAAACCCCACAACATCCTACTAGATAAAAACTTTGTTCCAAAGATCTCCGACTTTGGATTGGCAAAGCAATATTCAATACATAACAGCATTGTTACAACGACTGCAGCAAGAGGAACCATTGGATATATAGCTCCAGAATTGTTTTATAATAATATTGGAGGAATATCCAATAAAGTTGATGTTTATAGCTTTGGAATGCTCTTAATGGAGATGTCAAGCAAAAGGAAGAATCTAAATCCCCATGCAGAGCACTCAAGTCAACTTTACTATCCATTATGGATTTATAATCACATTAGAGAAGATGAAAATATTGAAATGGAAGACGTGACAGAAGATGAGAAAAAGATAGTAAAGAAGATGATCATAGTAGCCTTATGGTGTATACAATTGAAACCTAATGATCGTCCTTCAATGAATAGAGTAGTGGAAATGCTTGAAGGGAACGTTGAAGACCTAGAAATACCTCCAAAGCCTACTCTATATCCAGATGAAACAGTGACAGAAGGTCAAACAATCAATTTACATTCTTAA 1863 0.3961 MWRERALFLVLLLLVHHICATNKKQLCLPSSCGNITHISYPFRLQGDPENCGDERYELGCQNNVTVLYLHSAQYHVQAINYNKYKVRVVDPALQLHNCSSLPLRSLSRSNFSDTYTNNMGPYQAGLRPDRNWEYLSFEHIVFLNCNHSVRENGKYVESGECVKWESNGYAYAVGGDLKAEDLEVGCDVKLVAPTSFRTFNNHSYAAIHMALAYGFEISWIKLACKKHHCRFGFCYFNRSRQKLQCSLGLLDMLAAFSILGFKAWACIRALFGLLLIVALLICKWRKRHASMYQNIENYLGQNNFAPIRYSFSDIKKMAGGFKEKLGEGGFGSIFKGKLRTGSSVAIKILDKSKGKGQDFISEVAIIGKIHHQNVVQLIGFCVHGSKRYLVYEFMPNGSLDKFIFSTDRSGHLTYERIYNISVGVARGIAYLHHGCEMKILHFDIKPHNILLDKNFVPKISDFGLAKQYSIHNSIVTTTAARGTIGYIAPELFYNNIGGISNKVDVYSFGMLLMEMSSKRKNLNPHAEHSSQLYYPLWIYNHIREDENIEMEDVTEDEKKIVKKMIIVALWCIQLKPNDRPSMNRVVEMLEGNVEDLEIPPKPTLYPDETVTEGQTINLHS* 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1645 620 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 266 613 - -
Vra6g1645 620 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 7 247 - -
Vra6g1645 620 SMART serkin_6 319 589 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g1645 620 Gene3D Phosphorylase Kinase; domain 1 282 393 - -
Vra6g1645 620 ProSitePatterns Serine/Threonine protein kinases active-site signature. 439 451 IPR008271 GO:0004672|GO:0006468
Vra6g1645 620 PANTHER RUST RESISTANCE KINASE LR10-RELATED 266 613 IPR045874 GO:0004672
Vra6g1645 620 PANTHER RUST RESISTANCE KINASE LR10-RELATED 7 247 IPR045874 GO:0004672
Vra6g1645 620 ProSitePatterns Protein kinases ATP-binding region signature. 325 347 IPR017441 GO:0005524
Vra6g1645 620 Pfam Wall-associated receptor kinase galacturonan-binding 27 90 IPR025287 GO:0030247
Vra6g1645 620 SUPERFAMILY Protein kinase-like (PK-like) 305 590 IPR011009 -
Vra6g1645 620 Pfam Protein kinase domain 322 587 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g1645 620 ProSiteProfiles Protein kinase domain profile. 319 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g1645 620 Gene3D Transferase(Phosphotransferase) domain 1 394 598 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1645 Vra-Chr6 32273759 32276617 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1645 8 617 Receptor kinase-like Gene Family AT1G66910 34.187 1.23e-111 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vra6g1645 Pkinase 4.8e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1645 - - vun:114195573 904.82