Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1644 ATGGAGGGCGCGTGGCAGAAGAATTGTGATTCGCCGTTTCAGCCGTCGATGTCTGCGGCGGTTTCCTCCGTACCGGCGTTGGAGCCGGAGATGGATGCAAGTTATCTTTATCCACAATTAGCACATGGTTTAAGATCACAATTTGTTGGAGGGAAGCAAGGCCCTGTTTACCCAAGCTTTCCCCTCTCAACCACCCCTGGGTCAGGCCAAACAGATGCTGGAAATTCTTTTATGGTTCTACCTTATGGTTCTCCATCCTCGTTACGGTATGATTTTCAGAATATGTCTGAACGCAAGCTTGGCATGTCATCTGGTGATTCTACTGATGCTATTGGGAATCCTGTTGTTGGTTCTATAGAAAGTGGAACCTTCCGGACATCCGGAGTGGGGTTGATAACAGAAAATTTGATTAACTGTAACCTGCAAAGTTGGGTGAATAATTTTCCTGAGATTTCTTCTAGAGCAATGGTTGGTTTGAATAATAGTAGTAATTTTGTCTTCCATAATATTTGGGGCAGCAATACTGCTACTCAGCACACAGTTCCTGGTGGTACAAAAGCGGCAGAATCTTTTTCTTTTCCAGAATGGGGCTCACCTAAGTATGCAACTCCTTATATGAGTGGGTGTCCTCGTGTGTTCTGCATGGGAAAAAGTGGCCATCTTCTTCTTAGCCATACAGGGCTTCTTGGTGTTGTGTGCTCATGCCATTGTTCCCACATGTCTGTTCTTAAGTTTTGTGAGCACTCGGGTTTACATGGTGGTGACCCAGGGGATGCTGTTTGTATGGAGAGTGGGGAGACCATTTCACAGTGGCGGAAGCTTTACTTCTTGAAGTTTGGGATTAGGTCTCTGGGGAATGAGAATGGATGGGACTGGCCAGAAGTATTATCAACAACAGGCAGTCCGATGAAATCCAATGCATCCGTGTTTGATATGTCCAAGACTAATTTGTCTCATATTTTGAGTTCATCTGCAGTCATGTCAAGGTCTGGAAAGTCTTCTGACTATGTCATGTTTCCAAATAATGCTCATATGGACAAAAATTTATTTGTTGGTACATTGTCCAGAAAACAAGCAACAACAATCCAGGATGGTTGCAACATTCCACTCAAAGGTTTTACTGGTATTTCACAAAACAGCTTTGTTGATTTGTTGAAAAGCCAGTTAATGGAATCTAATCTGGCTATGTACACAACTGTACCAAATTTTGGTGGAACTCAACTGGATGATGGTTGTCACCCTATACCTCCTTTCTTGGATTCTCTGAAAAGGAAAGTAAGTTTGTCAACGGTCCACTCACCTTTGCAAACACCAACAAACCTTTTGAAAGACCATGATTGCGTAAAAAAAAGAGTAAATGGTCTTGTAGGCAGAGATGCGGCTTCATTTAATGTTGACCTTAGGCTTGGTCAACCACCTCAGACAGGAAACCCACTTCCATCATTTGTAGAACCACTGCAGCTTAATGCCCTTGCCAGTACACCAAAATTGCAACCTCAGAAGCAGATGATTAATAATGCAGACCTCAGCAGGGAGGAGGGATTACAGAATAATTTTAGCTATTCTGCTGCTTCATTCAAATTGGTTGAAGAATTGCCTCAGCTTAAACCCAAGAACTATATGTCAGCTGTGAGCAAAGCTTCTGCTAAAGCTAGATCAGAAACACAAAATGTGGCCAAGGGTCTATCATTTTCACCATTTTTGCAAGTCGATGTACCTGGAAGAAAGACACAAGCTAGTGAAAATTTGTGGGCTGATGACAGCCCTAACATGCCTAAGAAACTGTATTCTGATTATGGTCTCACAGGAAGGCAATCAAATAAATCTGTCGTAGGGACCAATAAATATTTGGAAAATAATATAGGGGTGAGCTTTGCCAAAGATTCTGGTGGCAAAAAAAATCCAGGATTTGGAATTGGTCAGTTAATGAAATATCCAAGCTCCATGATGAGATCTGTTGGTGGTTATGATAGTTGTATCTCAGTTAACGAAAAGATGTATGAACCAAATTTTGAATCTAGCTTGCCATCAGATACATTGGTGCGGGCAAATATTTTGCATGGTTCATTCAATACGTCTTCTCTTGGGCTAGAAAATTATGTGATGAATCCTCAGACCTCCATTCCATTTAAAGAGGTTTTGAAAGGCCCTCCCTGTCATGTTTCAGTTTCTGTGTCAAATCAGACTCCGACTTTGCCACAGCAGCAGGCCATTAATAGGGATGCTTATTTTGTTGATGAAAACACGAGGTCGCTTGCTGTGACACAGATACCAGAGTTATCTAAGCAATATCATGCATTGCATTTTAATATGAATCAGAAGCAAGGGGGATCCAGCAGTATTTTGAAAGTTCCGCATTATACTTGTGAGGCTTCAACATCTGAACAGGGAACCTCTTGTGCAACATTGAAATTGCCTCAAAATAGGTGGATATTTGGGAATCATGAGAATACTGTTGGCTTAGAGAAGTTGCCTTCCCTCACAGGTATGAACGGATATTATCATTTGTCTGACCTGTCATCAACACCTTTACATTCTAAAGAAAAGGAATCACAATGTAAACATTCTTACGATCTTCAAAATGAAGAGACTTCTTTAAGCCTTGATATAAACAACGACAATATCAGTTCTAGTGCATGTGAAAAATACTCTGAGCAAATGCCAAATATATGTTTGGAAGGCAAGTATCCTTGTCCTGCTCTGATAAACTGTTGCCGAAGCAACTTTTCCTCAGGGATTGAACCCCTTCGTAAGAACCTAGGGCAACAACATGCTGATGTCAGTGGTGAAACTTCTTTGAAGATGCCTTCAGATTTGTGTAGAAATCTGAATACTTCGAAAACCGGAAATATCCACTTTGAGCAAGGTGAGAAGATACTTGGCCAAGACTCTACCATAATTGGCTTTCATGCTCCTCAATGGAGAGATGTGCCCAGTAAGGTCAGGAAAGCAGTTTGTGATGCAACATCTTTAGATCAAACATTCAATGGTTTGGATAAGGAAGCACGATATGGTTTTCAACTTGGAAACATTTCCACAAAACGCTACAAAATAACCACTGATATGGGAGACCTGTCAGAGGAAAAAGAAAATTCTAATGTTTCTTCTGGATGCTCTGCTCCTGTTATTACTCAGGCATCTGTGATGGTGAACAAAATTGATTACTGTACTGATGAAGCTATAGACACTGGCGTTGTCAGCAAGTTCGAAGTTGATGAAGGGTCAGGTATTGATCAAGGCTCCATGTCAGATTTGGTTGAAAGTGAAAGAACCGGTGAGTCTCTAGGCTTGATCTCGGGGAATTATTTGAAAAATGGTTGTTTGAGAGTGTTGAACGATGAATCAAGTTGTGATCTACTTGATGATCTTAAACTGTTAGATTCCTTGATATGGAAGAAAGAAAGGAATCAAAATCATTTTGTGCTTTCTGCTAATTGTAAAACCAATCAATCTCAAAAAGTCAAGAGGGGCATCAATGGAAGAAAGCGAAAGAGAAATATGGTGAAGATTCTAGATGCTTCATTATCTTCTGAATTCCCTTCCTTGTTGCACAATAAGAATAATAAAGATGCTGAGATTTTTAATTCCTCTTCTAGTTTGTCAAGAGAAATGCAAATGCATTCTCGGCCTAGCCTGCAGAAATCATTTAACAAGTCTTCCTTTGTTCAGTCTTGTAACACACAAATACAGTCCGCATTTGCATCCAAATTTGTTTCATGTAAGAATCGTCTGAGCAAGAATCTCGTTCATAAAGTTTCCTATGAGTCTCTATCAGATTCTGATGCTGAGTTTCACTCACTGCCTGTATTTTCTGGAACAAAGAGATTGAGAAAGAATCTCACTTCTGATTTTGAGCAGTTTCATATACAAGAACCATCCAATGAGGAACCTGAAAATGGTAAGTTGAGGCCATTCTTATGCAGGAAGGGAAATGATCATAGAACAAGGCCAGTAGTATGTGGAAAACATGGTGAAATTTGTAAAGAACATTTGGCTAAAGAGGTGCAAAAGCCTGCAAAAATTGTCTCCCTCAAGAAGGTCCTTAAGTCTTCCAAAGGGTGTTTGAGCCACACAAATGGAAAACCTAGACTAACATCAAAAAAGCAATGGAAGAAATTGAGCATTGGAACAGATAGTGGGTCCTGCTGTGGGAACCGTGGTTTAAAAATTAAGGAACACATTGAAACACAAAATACAATAATTTATAATGAAGCAAATGTTGATATGTCCCTGGAAGACTTGGAGAGAGGTGGCACGCAAGATGCTAAAGCTAAAGCTAAGCAGGGTGTTAGGGTTGGAAATACAGAAAACGTTCGATTGAAGGTGAAGAACAAGGACATTCGGAAACACCGCAGCATTAATGAGCTTACTGCTAAAGAAACCAAAGTGACGGATATGATGGATTGTTCTCAAGACAGAGAGACTGGTTTTTGTAGCCCAAAAAGTAGAAACTCTAGTCAAGGTCACCTAAACATATCTACCATAAAGTCAGATACCTTCTGCTGTGTGTGCCGAAGCTCAAGCAATGATGAAATCAACTGTTTGTTGGAATGTTGTCAATGCCTAATTCGAGTGCACCAAGCTTGCTATGGTGTTTCCACATTACCCAAAAGAAGTCGCTGGTGTTGCAGACCATGCCGGACCAACTCAAAAAATATTGCATGTGTCCTATGTGGTTATGGAGGTGGAGCCATGACTCGAGCAACAGTGAATCATGCGATTGTCAAGAGCCTCTTAAAAGTGTGGAATGTTGAGAAAGATGGCATGCCTAAGCATACAACTTCATATGAATTTTTTGGAAAGGAAATATATGCATTCCCATCCTCAAAGTTTGGTCAAGAAAGTGTTTTAAAGACAAAAATCCGTGATACATCAACAGATCTGATGAAAGTTCAAATATCTACAAATCATATGCAGCATACCCTCACCAGTCTTTCTAATTTTAAGGTACACAACAGCGTTACTGCAGGAGTTCTTGATCCAACTGTTAAACAATGGATTCATATGGTTTGTGGTCTTTGGACTCCTGGAACAAGATGCCCGAATGTTGACACCATGAGTGCTTTTGATGTAGCTGGTGTTTCACGTCCCAGGGCAGATGTGGTTTGTTCCATTTGCCATCGATGGGGTGGTTCTTGTATAGAGTGCAGGGTGGCTGGTTGCTCTGTCAAGTTTCATCCTTGGTGTGCTCATCAAAAGAACCTGTTGCAAAGTGAGACTGAAGGTATTGATGATGAAAAGATTGGATTTTATGGAAGATGCATCCTTCATGCTATTGAACCTAGATATCTGTCAATGTATGATCCTATTGATGAAATGGGAAATCAAGAAGAAAAGGAATTCACCTGTGCCAGGGTAGAGGGTTACAAGGGAAGAAGATGTGATGGTTTTCAGGATAATCACTGCCAAGGTGGATGCCTTGTTCCTGAGGAGCAGCTTAATGCTTGGATTCACATCAATGGGCAGAAATTATGTTCTCAGGGACTCATAAAATTCCCCGATTTGGATATGGAGCATGATTGTCGAAAGGAATACGCTCGGTACAAACAAGCAAAGGGATGGAAACACCTTGTTGTGTACAAATCCCGTATACACGCACTTGGTCTTTACACTTCTCGATTCATTTCCCGGGGTGAAGTGGTGGTTGAATATGTTGGTGAAATTGTGGGATTGCGTGTGGCTGATAAAAGGGAGAAAGATTATCAATCTGGAAAGAAACTTCAGTACAAGAGTGCCTGCTATTTCTTCAGGATAGACAAAGAGCATATTATTGATGCCACAAGGAAAGGGGGGATTGCTCGGTTTGTTAACCACTCGTGCCTGCCAAATTGCGTGGCAAAAGTGATTACTGTAAGGCATGAAAAGAAGGTTGTCTTCTTTGCTGAGAGGGATATATTTCCTGGTGAAGAGATTACGTATGATTACCACTTTAATCACGAGGACGAAGGAAAGATTCCATGCTACTGCTATTCAAAAAATTGCAGGCGCTATATGAACTGA 6000 0.4082 MEGAWQKNCDSPFQPSMSAAVSSVPALEPEMDASYLYPQLAHGLRSQFVGGKQGPVYPSFPLSTTPGSGQTDAGNSFMVLPYGSPSSLRYDFQNMSERKLGMSSGDSTDAIGNPVVGSIESGTFRTSGVGLITENLINCNLQSWVNNFPEISSRAMVGLNNSSNFVFHNIWGSNTATQHTVPGGTKAAESFSFPEWGSPKYATPYMSGCPRVFCMGKSGHLLLSHTGLLGVVCSCHCSHMSVLKFCEHSGLHGGDPGDAVCMESGETISQWRKLYFLKFGIRSLGNENGWDWPEVLSTTGSPMKSNASVFDMSKTNLSHILSSSAVMSRSGKSSDYVMFPNNAHMDKNLFVGTLSRKQATTIQDGCNIPLKGFTGISQNSFVDLLKSQLMESNLAMYTTVPNFGGTQLDDGCHPIPPFLDSLKRKVSLSTVHSPLQTPTNLLKDHDCVKKRVNGLVGRDAASFNVDLRLGQPPQTGNPLPSFVEPLQLNALASTPKLQPQKQMINNADLSREEGLQNNFSYSAASFKLVEELPQLKPKNYMSAVSKASAKARSETQNVAKGLSFSPFLQVDVPGRKTQASENLWADDSPNMPKKLYSDYGLTGRQSNKSVVGTNKYLENNIGVSFAKDSGGKKNPGFGIGQLMKYPSSMMRSVGGYDSCISVNEKMYEPNFESSLPSDTLVRANILHGSFNTSSLGLENYVMNPQTSIPFKEVLKGPPCHVSVSVSNQTPTLPQQQAINRDAYFVDENTRSLAVTQIPELSKQYHALHFNMNQKQGGSSSILKVPHYTCEASTSEQGTSCATLKLPQNRWIFGNHENTVGLEKLPSLTGMNGYYHLSDLSSTPLHSKEKESQCKHSYDLQNEETSLSLDINNDNISSSACEKYSEQMPNICLEGKYPCPALINCCRSNFSSGIEPLRKNLGQQHADVSGETSLKMPSDLCRNLNTSKTGNIHFEQGEKILGQDSTIIGFHAPQWRDVPSKVRKAVCDATSLDQTFNGLDKEARYGFQLGNISTKRYKITTDMGDLSEEKENSNVSSGCSAPVITQASVMVNKIDYCTDEAIDTGVVSKFEVDEGSGIDQGSMSDLVESERTGESLGLISGNYLKNGCLRVLNDESSCDLLDDLKLLDSLIWKKERNQNHFVLSANCKTNQSQKVKRGINGRKRKRNMVKILDASLSSEFPSLLHNKNNKDAEIFNSSSSLSREMQMHSRPSLQKSFNKSSFVQSCNTQIQSAFASKFVSCKNRLSKNLVHKVSYESLSDSDAEFHSLPVFSGTKRLRKNLTSDFEQFHIQEPSNEEPENGKLRPFLCRKGNDHRTRPVVCGKHGEICKEHLAKEVQKPAKIVSLKKVLKSSKGCLSHTNGKPRLTSKKQWKKLSIGTDSGSCCGNRGLKIKEHIETQNTIIYNEANVDMSLEDLERGGTQDAKAKAKQGVRVGNTENVRLKVKNKDIRKHRSINELTAKETKVTDMMDCSQDRETGFCSPKSRNSSQGHLNISTIKSDTFCCVCRSSSNDEINCLLECCQCLIRVHQACYGVSTLPKRSRWCCRPCRTNSKNIACVLCGYGGGAMTRATVNHAIVKSLLKVWNVEKDGMPKHTTSYEFFGKEIYAFPSSKFGQESVLKTKIRDTSTDLMKVQISTNHMQHTLTSLSNFKVHNSVTAGVLDPTVKQWIHMVCGLWTPGTRCPNVDTMSAFDVAGVSRPRADVVCSICHRWGGSCIECRVAGCSVKFHPWCAHQKNLLQSETEGIDDEKIGFYGRCILHAIEPRYLSMYDPIDEMGNQEEKEFTCARVEGYKGRRCDGFQDNHCQGGCLVPEEQLNAWIHINGQKLCSQGLIKFPDLDMEHDCRKEYARYKQAKGWKHLVVYKSRIHALGLYTSRFISRGEVVVEYVGEIVGLRVADKREKDYQSGKKLQYKSACYFFRIDKEHIIDATRKGGIARFVNHSCLPNCVAKVITVRHEKKVVFFAERDIFPGEEITYDYHFNHEDEGKIPCYCYSKNCRRYMN* 2000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1644 1999 SUPERFAMILY SET domain 1817 1995 IPR046341 -
Vra6g1644 1999 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1643 1758 IPR013083 -
Vra6g1644 1999 ProSiteProfiles SET domain profile. 1855 1976 IPR001214 GO:0005515
Vra6g1644 1999 ProSiteProfiles Extended PHD (ePHD) domain profile. 1641 1758 IPR034732 -
Vra6g1644 1999 ProSiteProfiles Zinc finger PHD-type profile. 1498 1549 IPR019787 -
Vra6g1644 1999 Pfam PHD-zinc-finger like domain 1663 1737 - -
Vra6g1644 1999 Pfam PHD-finger 1513 1547 - -
Vra6g1644 1999 Gene3D SET domain 1762 1999 IPR046341 -
Vra6g1644 1999 ProSiteProfiles Post-SET domain profile. 1983 1999 IPR003616 -
Vra6g1644 1999 Pfam SET domain 1868 1975 IPR001214 GO:0005515
Vra6g1644 1999 SMART set_7 1855 1982 IPR001214 GO:0005515
Vra6g1644 1999 CDD ePHD 1665 1757 - -
Vra6g1644 1999 SMART PHD_3 1500 1547 IPR001965 -
Vra6g1644 1999 SMART PHD_3 1702 1758 IPR001965 -
Vra6g1644 1999 Pfam Tify domain binding domain 228 274 IPR032308 -
Vra6g1644 1999 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1486 1554 IPR013083 -
Vra6g1644 1999 CDD SET_SETD1-like 1857 1995 - -
Vra6g1644 1999 PANTHER HISTONE-LYSINE-N-METHYLTRANSFERASE 2 KMT2 FAMILY MEMBER 35 1999 - -
Vra6g1644 1999 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE TRITHORAX 35 1999 - -
Vra6g1644 1999 SUPERFAMILY FYVE/PHD zinc finger 1496 1552 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1644 Vra-Chr6 32249112 32265581 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1644 1857 1995 C2H2 Transcription Factor Family AT2G23740 33.962 1.58e-16 84.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vra6g1644 SET 1e-17 No_clan