Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1639 ATGAAAACGAAGCTTCTTCTTTTGCTTCTCATGCTCCACAAACCCATTTGGACTCTTGCTTCTCCATACCCTTTTGCTTCCTCACCTCAAGTTCCACTCTTTTCTCCATTTCCCAATTCAATGTCTGCTTCCTCTCCAGGAATTGTGATGGGGGCTGAACAGCGGCAAATGGATTCGCACAAGAAAATGGTAATTGCCATTGCCATAGCCAGCACTTCACTTGGTGCAGTCATTTTGAGTGTGTTGTGCATCTGGATTTATCATACCAAGTATCCTTCAAAATCCAAAGGGAAAAACGTTCAAAGATCAGATGCTGAGAAAGGGCCAGCTTCAGCACCAACTCTGAGTAAATTCAGCTCTATAAAGCTGGTTGGTACGAAAGGGTGTGTTCCAATAATTGATTATAAGCAAATAGAAAAAGCAACCGGCAATTACAAGGAAAGTAACATCTTAGGTGAGGGAGGTTTTGGATGTGTTTACAAAGCACATTTGGATGATAATTTGGAAGTTGCCGTTAAGAAATTGCACTGTGAAAATCCGTGTGCTGAGCAAGAATTTGAGAACGAGGTGGAATTATTAAGTAAAATTCAACATCCAAATGTAATTTCTCTGCTGGGATGTAGCAGTAATGAAGCTACAAGGATTATTGTCTATGAATTGATGCACAATGGATCATTGGAAACACAATTACATGGACCTTCTCATGGCTCAGCATTGACTTGGCATTTGAGGATGAAGATTGCTCTTGACACAGCAAGGGGATTAAAATATCTGCATGAACACTGTTATCCTGCAGTGATCCATAGAGATCTGAAATCTTCTAATATTCTTTTAGATGCAAAGTTCAATGCTAAGCTTTCTGATTTTGGCCTTGCCATAACCAATGGGACCCAAAACAAGAATAATATCAAGCTTTCAGGCACGTTGGGTTACGTAGCCCCGGAGTATCTTTTAGATGGTAAATTGACTGATAAAAGTGATGTATATGCTTTTGGAGTTGTTCTGCTGGAGCTTCTCTTGGGAAAGAAGCCTGTGGAAAAACTAGCACCAGCTCAATGCCAATCCATTGTCACATGGGCCATGCCACAGCTCACAGACAGATCTAAGCTTCCAAACATCGTGGATCCTGTAATTAAGGATACAATGGACCCCAAACACTTGTACCAGGTTGCTGCAGTGGCCGTGCTGTGCGTGCAACCAGAGCCAAGTTACCGTCCCCTAATTGCAGATGTTCTCCACTCACTCATTCCTCTTGTCCCTGTAGAGCTTGGAGGAACACTTAAAGTAGCACAGCTGCCACAGCAAGTATTACCTGCTAACCCACATGAGGATTCTAGTCCATGA 1344 0.4234 MKTKLLLLLLMLHKPIWTLASPYPFASSPQVPLFSPFPNSMSASSPGIVMGAEQRQMDSHKKMVIAIAIASTSLGAVILSVLCIWIYHTKYPSKSKGKNVQRSDAEKGPASAPTLSKFSSIKLVGTKGCVPIIDYKQIEKATGNYKESNILGEGGFGCVYKAHLDDNLEVAVKKLHCENPCAEQEFENEVELLSKIQHPNVISLLGCSSNEATRIIVYELMHNGSLETQLHGPSHGSALTWHLRMKIALDTARGLKYLHEHCYPAVIHRDLKSSNILLDAKFNAKLSDFGLAITNGTQNKNNIKLSGTLGYVAPEYLLDGKLTDKSDVYAFGVVLLELLLGKKPVEKLAPAQCQSIVTWAMPQLTDRSKLPNIVDPVIKDTMDPKHLYQVAAVAVLCVQPEPSYRPLIADVLHSLIPLVPVELGGTLKVAQLPQQVLPANPHEDSSP* 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1639 447 PANTHER BNAA04G14780D PROTEIN 42 436 - -
Vra6g1639 447 ProSiteProfiles Protein kinase domain profile. 145 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g1639 447 ProSitePatterns Protein kinases ATP-binding region signature. 151 174 IPR017441 GO:0005524
Vra6g1639 447 MobiDBLite consensus disorder prediction 94 113 - -
Vra6g1639 447 Gene3D Transferase(Phosphotransferase) domain 1 221 420 - -
Vra6g1639 447 Gene3D Phosphorylase Kinase; domain 1 111 220 - -
Vra6g1639 447 Pfam Protein kinase domain 145 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g1639 447 SMART serkin_6 145 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g1639 447 CDD STKc_IRAK 151 418 - -
Vra6g1639 447 PANTHER OS01G0750732 PROTEIN 42 436 - -
Vra6g1639 447 ProSitePatterns Serine/Threonine protein kinases active-site signature. 266 278 IPR008271 GO:0004672|GO:0006468
Vra6g1639 447 SUPERFAMILY Protein kinase-like (PK-like) 125 415 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1639 Vra-Chr6 32195598 32200493 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1639 15 361 Receptor kinase-like Gene Family AT1G80640 47.123 5.42e-102 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-X Vra6g1639 Pkinase 7.9e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1639 - - vra:106764755 879.011