Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1637 ATGGCCAGACCACAACAGCGTTACCGAGGTGTCCGACAAAGGCATTGGGGCTCTTGGGTCTCCGAAATTCGCCACCCCATATTGAAGACAAGGATATGGCTTGGTACATTTGAAACAGCTGAGGATGCAGCCAGAGCCTATGATGAAGCAGCTAGGCTAATGTGTGGTGCCAGGGCAAGGACAAACTTCCCTTTCAACCCCAATGTGTCTCACACATCATCTTCTAGTTCAAAGCTTCTCTCAGCAACTTTGACTGCAAAACTTCACAGGTGCTACATGGCTTCTTTGCAAATGACAAGACAGGCTTTGGCATCATCAGGGTCTGAGAGAAAATCTTCAGTGCCAAATGCCACTTCCGCATCCCAACCAAAGAGTCTGAGTGTGAAGAGTGAGCAAACTCATCAAGTGTTGCCACACAAGAGAGAAGAGGAGGATCAAGACTCAGAGGCCAACAGGGGTGTTAAAATGGCCAGAACTGTTGAAAGTCTTCCTCTGCAGTTCAAGCCTCTTGAGGAAGATCACATAGAGCAAATGATTGAGGAGCTTCTTGATTATGGCTCTGTTGAGCTCTCCTCTGTCTTTTCACCTCAGGCCATTTAA 600 0.475 MARPQQRYRGVRQRHWGSWVSEIRHPILKTRIWLGTFETAEDAARAYDEAARLMCGARARTNFPFNPNVSHTSSSSSKLLSATLTAKLHRCYMASLQMTRQALASSGSERKSSVPNATSASQPKSLSVKSEQTHQVLPHKREEEDQDSEANRGVKMARTVESLPLQFKPLEEDHIEQMIEELLDYGSVELSSVFSPQAI* 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1637 199 MobiDBLite consensus disorder prediction 103 154 - -
Vra6g1637 199 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 193 - -
Vra6g1637 199 MobiDBLite consensus disorder prediction 103 133 - -
Vra6g1637 199 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Vra6g1637 199 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Vra6g1637 199 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Vra6g1637 199 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Vra6g1637 199 MobiDBLite consensus disorder prediction 134 154 - -
Vra6g1637 199 SUPERFAMILY DNA-binding domain 7 65 IPR016177 GO:0003677
Vra6g1637 199 CDD AP2 6 64 IPR001471 GO:0003700|GO:0006355
Vra6g1637 199 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Vra6g1637 199 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Vra6g1637 199 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF003-LIKE 1 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1637 Vra-Chr6 32159307 32160926 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1637 1 199 AP2-EREBP Transcription Factor Family AT5G25190 59.799 2.36e-74 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vra6g1637 AP2 6.5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1637 - - gmx:100785918 314.309