Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1633 ATGGAAGGAAGAAGCAAGAAGGAGGCATACTTTTGTGACAGAGGAAGCATCTTCTCTGGTGGTGCAGAGGCACCTCCTAGTCCAAGCACTCCGCTTCAGCATCCACATGAGAAGAAACAGGTATCTGTTGAGGAAGAAGAGGAAGAAAATAAGGAGTCAAAGCATGGTGTTATATTGGATCTAAATGTTTCAGGTGATGATTCTTGCAGTGCAGAAGCACTAGAACTGAATCTCATAACCTGTTTGGATGTGGGCTCATCATCCATTAGTGGGAATTCTTCTTCAGAAGTCCCTCTTGCTTCTGATGCTGCTGAGCCAAGAGTCTTCTCTTGCAACTACTGTCACAGAAAGTTCTACAGTTCACAAGCACTTGGTGGGCATCAAAATGCACACAAGAGGGAGAGGTCAATAGCAAAGAGAGGCCACAGGTTTGGATCACAGATAATGGCCTTTGGCCTTCCCTTACTGCATAATAACACCCACTATCCGAGCATGGCTTCCCTACCCCTTTATGGTGCTACCAATAGTAGAGGAGGACCTCTTGGAATTCAAGCACACTCCATGATCCAAAAGCCCTCTCATCATCATCATCATCATCATCATGTGAGTGGATTTGGAAACTCTTATGCACACCACCATGGTTGGTCAAGACCCATCATTGACCAACAACCTGGAATAGCAAAACTACCGGTGGCTGATTTTCACAGAACAAAATCAGCATTTTCATCATCACAAACAAGTGTTGGTAGGTTTGAAACGGCTAGCACCCTGATGAATTCTTCAGGCAATAAGGAAATCGGTGGTGCTGAAACTCGTTTGAAGGGTAATAATCAAGAAGAAATGAAGCACCTTGATTTATCCCTCAAGCTCTAA 873 0.4433 MEGRSKKEAYFCDRGSIFSGGAEAPPSPSTPLQHPHEKKQVSVEEEEEENKESKHGVILDLNVSGDDSCSAEALELNLITCLDVGSSSISGNSSSEVPLASDAAEPRVFSCNYCHRKFYSSQALGGHQNAHKRERSIAKRGHRFGSQIMAFGLPLLHNNTHYPSMASLPLYGATNSRGGPLGIQAHSMIQKPSHHHHHHHHVSGFGNSYAHHHGWSRPIIDQQPGIAKLPVADFHRTKSAFSSSQTSVGRFETASTLMNSSGNKEIGGAETRLKGNNQEEMKHLDLSLKL* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1633 290 MobiDBLite consensus disorder prediction 37 55 - -
Vra6g1633 290 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 20 290 - -
Vra6g1633 290 ProSitePatterns Zinc finger C2H2 type domain signature. 111 131 IPR013087 -
Vra6g1633 290 ProSiteProfiles Zinc finger C2H2 type domain profile. 109 136 IPR013087 -
Vra6g1633 290 SUPERFAMILY beta-beta-alpha zinc fingers 106 136 IPR036236 -
Vra6g1633 290 MobiDBLite consensus disorder prediction 17 55 - -
Vra6g1633 290 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 20 290 IPR044246 GO:0009788
Vra6g1633 290 Gene3D Classic Zinc Finger 99 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1633 Vra-Chr6 32072475 32073906 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1633 27 290 C2H2 Transcription Factor Family AT5G10970 38.376 4.45e-45 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1633 - - gmx:100809569 359.762