Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1630 ATGGATGATTTCAGAAATGAGTTTCACAAAGGATTGCATGTTCTTGCTGTTGATGATGACTCAACGTGTCTCAAGATTCTGGAGACTATGTTACAAAAGCACAAATACCATGTAACAGCCACTAAAAATGCACAAACAGCATTGAATCTGTTGAGAGGAAACAAAAGCGGGTTTGACCTTGTTATCAGCGATGTACAAATGCCAGACATGGATGGATTTAAGTTGCTTGAGCTTGTGGGGCTTGAGATGGACCTACCTGTCATAATGATGTCGGTAGATGATGATTTTAAGATGGTGATGAAGGGAATTAAACATGGAGCTTGTGATTATCTTCTGAAACCTGTGAGACTTAAGGATGTAAAGAATATTTGGCAGCATGTTGCCAGAAGGAGGAGGATGGGTTCAAAGGAGCAGGATAGAAGCAGTAACCAAGACAAAGCTAATACTGACAGCAATGAAAGAGGTTCAGTAGCAACAGGAAATTCAGATCAAAATGTAAAGTCTTCCCGAAAGAGGAGGGATGAGGATGACTATGATAATGACGACCAAGAGAATGACCATGACAATGAGGACTCATCATGTCATAAGAAAGCTCGAGTTGTTTGGAATGCTGAACTGCACCACAAGTTTGTTTCTGCTGTTAATCAATTAGGCTTTGAAAAAGCTGTGCCTAAAAAGATTCTTGACTTGATGAATGTTGAAAAGCTTACAAGGGAGAATGTGGCCAGCCACCTTCAGAAATATAGGCTTTATCTGAAAAAGATTAACTGTGCGGCGAACCGGCAGGCTAATATGGTTGCAGCATTAGGCACTACAGATCCATCATTTCTGAGAATAGGTTCTCTGAGTGGTGTTGGACATTTGCATTCATTGACTGGTTCTCAACAGTTTCATAACAGTACTTTCAGACCCTTTGGACCTGGTGGAATGGCTGGTAGATTGAACACTTCTGTTGGTTTGAATGTGCATGAAACTCTTCAGTTTGGTCATGCACAAAATTTTTACAAATCTATGCATGATCCACTCAAGTTTCAACCTGCTATAATTGGTGGCAATCAGAATGGTATTCAGGGAGTGCCATTGTCCACTGCTGTTGATCAATTTCAACATAATAAGGGTGTTGGTATTGCTGTTAGTCCGATTCAAAGCGTTTCCCCTTTTTTTGATGTTCAACCAAATTTTTCAGTGCCAAATAAACTCCCAGATCTGATACCAACATCAACAGTAGGTTGCTCAGCCTCTCCTGTTTTGGACGTATCAAACAATGCTTTGGTATTGAAAGCTGATAGTGAAAACACACAAGGGGGTGGAGTGTTGTTTGGTCAGACTTCATTAGCCTCTCAGAATTCTCAATTCTCACTCCCTTTGCTGGATCAGGGTAGATGCAGTGATATTTGGTCAAATACTGTTCAGTCATCCGGGACAAATTCTTACCCTGCAGGTGAAACTTTTGGAGTGAGGAATCTGAATGGTGCTTCATCCATTACTTCACTGTCTAATCCATCCCATTATTCACTAAAAGATATGCATTCACAAGGAGTTCTTATTCCAAATAATTCTGGACAAATTACCAATAATGTGGTGCCATTTCAAGGAAACACAGACTTCAGTTTCTTTGATCCCTTACTGATGAAACCTGATGGAGTTATTGAAGAAAACACATTGAAACAACAACAGGGATACATCATGAACCATACCAAGTCTCAAAACAATAGTGCCGCTAATAATCTTGGTTCCGTGGAAGAATTTGTCAGTTCAATGATGAAACAGAAACAAGAGAATGTGAAATTATTGGAAGGATATTTATGCGACAACAATCTCTCAGACGGGACATCCATTTGA 1842 0.3996 MDDFRNEFHKGLHVLAVDDDSTCLKILETMLQKHKYHVTATKNAQTALNLLRGNKSGFDLVISDVQMPDMDGFKLLELVGLEMDLPVIMMSVDDDFKMVMKGIKHGACDYLLKPVRLKDVKNIWQHVARRRRMGSKEQDRSSNQDKANTDSNERGSVATGNSDQNVKSSRKRRDEDDYDNDDQENDHDNEDSSCHKKARVVWNAELHHKFVSAVNQLGFEKAVPKKILDLMNVEKLTRENVASHLQKYRLYLKKINCAANRQANMVAALGTTDPSFLRIGSLSGVGHLHSLTGSQQFHNSTFRPFGPGGMAGRLNTSVGLNVHETLQFGHAQNFYKSMHDPLKFQPAIIGGNQNGIQGVPLSTAVDQFQHNKGVGIAVSPIQSVSPFFDVQPNFSVPNKLPDLIPTSTVGCSASPVLDVSNNALVLKADSENTQGGGVLFGQTSLASQNSQFSLPLLDQGRCSDIWSNTVQSSGTNSYPAGETFGVRNLNGASSITSLSNPSHYSLKDMHSQGVLIPNNSGQITNNVVPFQGNTDFSFFDPLLMKPDGVIEENTLKQQQGYIMNHTKSQNNSAANNLGSVEEFVSSMMKQKQENVKLLEGYLCDNNLSDGTSI* 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1630 613 PIRSF RR_ARR_type-B 1 609 IPR017053 GO:0003677|GO:0003700|GO:0009736
Vra6g1630 613 MobiDBLite consensus disorder prediction 148 165 - -
Vra6g1630 613 MobiDBLite consensus disorder prediction 129 147 - -
Vra6g1630 613 SMART REC_2 12 124 IPR001789 GO:0000160
Vra6g1630 613 SUPERFAMILY CheY-like 10 136 IPR011006 -
Vra6g1630 613 SUPERFAMILY Homeodomain-like 194 254 IPR009057 -
Vra6g1630 613 CDD REC_typeB_ARR-like 14 128 - -
Vra6g1630 613 Pfam Response regulator receiver domain 14 121 IPR001789 GO:0000160
Vra6g1630 613 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 197 250 IPR006447 GO:0003677
Vra6g1630 613 ProSiteProfiles Response regulatory domain profile. 13 128 IPR001789 GO:0000160
Vra6g1630 613 PANTHER TWO-COMPONENT RESPONSE REGULATOR 5 599 - -
Vra6g1630 613 MobiDBLite consensus disorder prediction 129 194 - -
Vra6g1630 613 Gene3D - 193 256 - -
Vra6g1630 613 PANTHER TWO-COMPONENT RESPONSE REGULATOR 5 599 IPR045279 GO:0009736
Vra6g1630 613 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 196 253 IPR017930 -
Vra6g1630 613 Pfam Myb-like DNA-binding domain 199 249 IPR001005 -
Vra6g1630 613 Gene3D - 12 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1630 Vra-Chr6 32044562 32048926 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1630 6 602 Response Regulator Gene Family AT2G25180 41.252 6.39e-116 356
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Vra6g1630 Response_reg 1.6e-23 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1630 - K14491 var:108336977 1077.77