Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1629 ATGGCTGCAACTCAGGCTAATGATCCTAGAAGCATAGTTTCTATTTCAAAGATTGTTTCTGTGAATCCAAAACTCGTGCAACCTCAGAGGGTTCTGACTCTTTCAAATTTGGACAGGCAGTGTCCACACCTCATGCACTTGGTGTTCTTCTACAATAACCTGCCTCACCAGAGGTTGAATGACTTGTCCCTCAATTCAGTGTTCTGCAGCTTGAAATCTGGCTTGGAAGATACCTTGGCTCTGTGGTATCCTGCTGCAGGTAGGCTTTGGCCCAATCAAAGTGATGGCAAGCTCAACCTGTGGTGCAACAACCATGGTGCAGTTCTTGCAGAGGCTGAAACCTCTGCTAAAATCTCACAACTTGGAAACCTCTCTGAGTACAATGAATTCTTTGAGAAGCTGGTTTATAAGCCAGCTTTTGATGGGAATTTCTCAAATATGCCGCTGATTGTTGCTCAGGTCACTAAATTTGGTTGTGGAGGGTATTCAATTGGTATTGGAACAAGCCACTCTTTGTTTGATGGGCCAGCAACCTATGACTTCTTGCGTGCATGGGCTTCAAATTCAGAAATTGTGAAAGGAAGAAGCAGATCTGATGAAGTTCCAAAGCCAGTGCATGAGAGAGGGATACTTCTGAGAGGTACTCTTGAAGAAGCAAGAGAGACTGGAAATTTTCCTTCAGACACAAGTTCAAGGACCATGGCAGTAGATCACTTATATCATCTTATAATGCAAACAGCTTGTGCACAAAAGGGTTTTCCTCTGCAAATTGAAACACCCTCTAATTCAAAGAAGTGTGTTCTTAAAACCTATCATGTTTCAGGTGCAATGACAGAAAACTTGAAAAGGAAACACTTCCCCATGCAAAGAGGTTCATTTCCTTTCTCAACCTTTGAGGTTCTTGCAGCTCACCTTTGGAAGGCAAGGAGCAAAGCTTTAGGGGTGAAAAAGGAAAAACAAGTATGCCTCCAATTTGCAGTGGACATAAGGAACAAGACGAAACCAGCATTGCCAAAGTGTTTCAGTGGAAATGCATATGTTCTTGCATCGATCATGATGTCAATGGGAGAATTGGAAAATGCAAGCTATGAAAGCATCATTGAGAAAATAAGAGAAGCGAAGAACAAAGTGAACGAGGATTATGTGAGAAGCTACGTTGAAGCACTAGAAGGAGCAGAACAAGGTTCTTCTCTTCCTCCACTTAAGGAGCTAACTCTGGTTTCCGATTGGACAAGAATGCCTTTTCACAACATTCAGTTCTTCCATGGAAAAGCAACCTATGCATCCCCTCTTGCCACTCCTATCCCACAGGTTGCATACTTCATGCAAAGCCCTACTCACAACATGGCCGTCGACATCAGAATCGGCTTGGAAGCTGAACATATAACTGCTTTTAATCACTGCTTCCTAACCATGGCCTCATGA 1425 0.4309 MAATQANDPRSIVSISKIVSVNPKLVQPQRVLTLSNLDRQCPHLMHLVFFYNNLPHQRLNDLSLNSVFCSLKSGLEDTLALWYPAAGRLWPNQSDGKLNLWCNNHGAVLAEAETSAKISQLGNLSEYNEFFEKLVYKPAFDGNFSNMPLIVAQVTKFGCGGYSIGIGTSHSLFDGPATYDFLRAWASNSEIVKGRSRSDEVPKPVHERGILLRGTLEEARETGNFPSDTSSRTMAVDHLYHLIMQTACAQKGFPLQIETPSNSKKCVLKTYHVSGAMTENLKRKHFPMQRGSFPFSTFEVLAAHLWKARSKALGVKKEKQVCLQFAVDIRNKTKPALPKCFSGNAYVLASIMMSMGELENASYESIIEKIREAKNKVNEDYVRSYVEALEGAEQGSSLPPLKELTLVSDWTRMPFHNIQFFHGKATYASPLATPIPQVAYFMQSPTHNMAVDIRIGLEAEHITAFNHCFLTMAS* 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1629 474 Gene3D - 10 220 IPR023213 -
Vra6g1629 474 Pfam Transferase family 19 468 - -
Vra6g1629 474 Gene3D - 246 471 IPR023213 -
Vra6g1629 474 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 10 472 - -
Vra6g1629 474 Coils Coil 360 380 - -
Vra6g1629 474 PANTHER BRASSINOSTEROID-RELATED ACYLTRANSFERASE 1 10 472 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1629 Vra-Chr6 32038273 32042573 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1629 13 465 Monolignol Biosynthesis Gene Families AT5G48930 25.054 4.64e-37 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1629 K15400 - gmx:100779295 765.763