Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1628 ATGAGTAGTTCAATTCAGCTTCGTGAAAGATCTAGTTGCAGGCCTCATTATAATTTTGATGAGTCAGACGATGAAGATCAAGTTATTTTCCATGGAGAACATGGAAAATCTGCTGAAAACGATGTGAAAGTTAATGAAGATGATACTAATGTTGGTGGTTCGGTTGAAGGGCTTCCTGGAAGCTCCCGTCAAAAGAAACGTAAGAACATCATTGATGATTCAAACGTTTCAGTTGTTCTCCCTAGGAAACGAGGGAGACCGAGAAAAAACATTGCTAAAAGTGATAAAACTGATACAAATGTGAATAGTTTTGCTGATCGGCTTCGAGAAAGATCCACGAAGCCAAATTATATAGACGAAGATTTGGAAATTTTTCCTAGCAAACATGGGAAATCCAAAGAAAACATTATAAAATTTGAAAGAAGTGACACGAAAGAGAATTCGTGTCAAGCTTGTGAAGAACAAGGTGAGCTTTTAAAATGTGAAACATGCACCTATTCTTTCCATTCTAGGTGTATAATCTCACCACTTAAAAGTCTCATTCCAGACAGTTGGAGGTGCCCTGAATGTGTTAGCCCACTCAGTGGCATTGATAAGATATTAGATTGTGAGATGCGTCCTGTGGTGGCTGCTGAAAGTGATGCACAGAATTTGGAGTCGAAACAAAATTCTGTCAAGCACTATCTTGTTAAGTGGAAGGGACTCTCATATTTGCACTGCACCTGGGTTCCGGAAGGAGAGTTTTTGAAGGCTTTCAAGACTCAGCCAGGTCTAAAGATCAGAATAAACAGCCTCCATCGTCGTATCGAATCAGCCAAGAATTTCAATGAAGATTTTGTTGGCATTAGATCCGAATGGACTATGGTTGACAGAATAATTGCTTCCAGGGTAAACGACGATACCAATGAATATCTTGTCAAATGGAAAGACCTTCCATACGACGAGTGTCACTGGGAGCAGGAAACTGATATCTCTGCTTTCCAAGCAGAAATAGAAAGATTTAACAAATTTCAGTCCAGAACAAGGAAGGTTTTGGATGCTTCTGAATCAGAAAATCTGCAGAAAGAATTTCTGCAGTATGAAAGCAGCCCGGGGTTTCTTTCAGGGGGTTCACTGCATCCATATCAACTTGAAGGATTGAATTTCTTACGATTTTCATGGTCCAAGCAAACCCATGTTATACTTGCTGATGAAATGGGACTTGGAAAAACCATTCAGAGCATTGCTTTCTTGGCATCGCTCTTTGAAAGCAAAGTTTGTCCACATCTGGTCATTGCTCCGCTCTCAACGTTGAGAAACTGGGAGCGTGAATTTGCAACGTGGGCACCTCAGATGAATGTTGTTATGTATTTTGGATCTGCCAACGCTCGTAATTTGATACGAGAGTATGAGTTTTACTTTCCCAAGAACCAAAAGGGGTTCCAGGGAAAGAAATCTAAACAGCTTGTTGGTGAAACCAGACAAGGAAGAATAAAGTTTGATGTTCTTTTGACATCATATGAGATGATAAATTGTGATTTATCATCTCTGAAGCCCATTAAGTGGGAGTGCCTGATAGTTGATGAGGGTCACCGTCTGAAGAACAAGAACTCTAAATTGTTTTCTTCGTTGACCCAACTTTCCAGCAAACACCGTGTGCTTTTGACTGGAACTCCTCTTCAGAACAATTTGGATGAACTTTTTATGCTGATGCACTTCCTTGATGCTGGAAAGTTTGGAAGTTTAGAGGGGTTTCAGGAAGAGTTTAAGGATATCAATAGAGAGGAGCAGATTCTGAGACTGCATAAAATGTTGGCACCGCATCTCTTGAGAAGATTGAAGAAAGATGTGATGACAGAACTGCCTCCAAAAAAGGAACTTATTTTACGTGTTGAATTATCCAGCCTTCAGAAAGAATACTACAAGGCAATTCTGACTCGTAATTATCCGATATTAATCCGCCGAGCTGGTATTTCTCTTATCAACGTTGTTATGGAACTGCGTAAGCTCTGCTGCCATCCCTTTATGTTTGATGGACTTCAACCTGATCTCAATATTAACGATGAAAAAGCTCCAATTGACTATTTGCTTGAATCCTGTGGGAAGTTACAACTGTTGGACAAGATGATGGTGAAACTGAAAGAGCAAGGTCATAGAGTCCTTATATATTCCCAATTTCAGAAAATGCTGGACTTGCTTGGAGATTACTGCTGTTACAGGAGTTGGCAATTTGAGAGGATAGATGGGAAGGTTGGAGGAGCTGAAAGACAAGTAAGGATAGATCGGTTTAATGCTGAAGATTCTTCAAGATTTTGTTTTCTTCTTTCTACAAGAGCTGGGGGATTAGGGATAAACCTTACTACAGCGGACACAGTCATTATATATGACAGTGATTGGAATCCTCATGCTGACTTGCAAGCCATGGCCCGGTCGCACCGCCATGGACAAAAAAAGAAGGTGATGATTTACAGGCTCATAGCAAGAGGAACCATTGAAGAACGGATGATTCAGATGACAAAGAAGAAAATGGTGTTAGAACACCTGGTTGTAGGGAGGCTACAGGCTGAAAACATTAAGCAGGAAGAGTTAGATGATCTCGTAAGATATGGCGCAGAGGAGTTGTTTGCTGATGAAAATGATGAAGCAAGCAAGTCTCGCCAGATTCATTATGATGATGATGCTATAGACAGATTGCTGGATCGTGATGGAGATGGAGGTNAAGATGCTGGTTTGGATGGTGAAGATGAAGATGGATTTCTTAAGGCTTTTAAGGTGGCAAATTTCGAATACATAGACGAAGTTAAGCCAGCAGAGGAGGTGGCACAAAAAGAATCAGAGGAGAATCAATTCTCTGCTGCCAATTTGAAGAAATCAGCTTACTGGGATGGCTTGTTGAAAATAGGATATGAACAGGGCAGAATTGAAGAACTAGATGCCTTAGGCAAAGGGAAGCGAACCCGCACCAAATGGCTGGGAGAAGGTTGTAGTACTTGGGGAGATTTAAGCTCAGATGATGAAAATTATAGTGAAGATGATTCAAATTCATTTGAGACTCCTACTCCTGCTAGAAGGGGAAAGAAAGTTCGTGCAGAGAACCCAGGGCCACTTCCTTTAATGGAAGGTCAAGGAAAATCGTTGAAAGTACTTGGTTTTAGTCAAAATCAAAGGGCTGATTTTCTTCAAATTTTGATGAGGTTTGGGGTTGGTGATTATGATTGGAAACAGTTTGCTCCCAGGATGAAACACAAGAGTTATGAAGAAATCACGGAGTATGGCATTCTTCTTTTGTCTCATATTTCAGAAGATATTACTGATTCACCAACATTCACAGATGGCGTTCCAAAGGAAGGACTTCGAATACAAGATGTCCTTGTAAGGATTTCACTTCTGATTATGATATCAGATAAAGTGAAGTTTGTATCAGAAAATCCTGGAATTCAACTTTTTTCATCTGATGTCTTAATACGCTATCCACGTTTGAAGGGTACAAATTTCTGGAAGATGGAGCATGATTTAGTGTTACTGCAGGCCGTGTTGAAGCATGGCTATGGAAGGTGGCATGATATTATTACGGATAAGGATCTGCAGATTCAGACGGTCATCTGTCAGGAGTTGAATATTGCAATTGCAGATGAAGCAGTTCAAGTACAGTCTGACTCACGAATGCTCCATGGTCCAAATAGTACAAATGGGGAGTGTAGCACGAGCTTCAACCAATCTAAGCAGAGTGATTTGTGTGGTTCTAGTGATCGTGGGAAGCAAATCCAGTCACATCATGAATCCGCCACGAGGGATCAGAATAAACAAATCAAGAGAGCACATATTGAGTTTATCAAGAGAAGGCTTCGTCTCTTGGAAAAAGGTCTCATCGCTGAGTACCAGAATGAACGCTTTAGTGAACTCAAAGCACAGGAGGAAAAAAAGAAACTAGATGAAGGCAACTCCACGCGTGTTAATGTGAACAAGTATATAGTTAAAGATACAGATGAACTGTATTATTACTTATATGATTTTGATGCAGATCGTATGCAACTACTGTCTCTTTACAATGAGATGTGCCAGACTGTGGAGGGCAGCGCCGCCGGTTTAGCAGAAAATGCAACAGAACAGCAACAACAAAAAGCTATTAAGAACTTGGGTCAAATCCAAAGCATTTGTGCAGATTTCTATGAAATTCTGCGTTATGAGACACCGGAGTGA 4179 0.4058 MSSSIQLRERSSCRPHYNFDESDDEDQVIFHGEHGKSAENDVKVNEDDTNVGGSVEGLPGSSRQKKRKNIIDDSNVSVVLPRKRGRPRKNIAKSDKTDTNVNSFADRLRERSTKPNYIDEDLEIFPSKHGKSKENIIKFERSDTKENSCQACEEQGELLKCETCTYSFHSRCIISPLKSLIPDSWRCPECVSPLSGIDKILDCEMRPVVAAESDAQNLESKQNSVKHYLVKWKGLSYLHCTWVPEGEFLKAFKTQPGLKIRINSLHRRIESAKNFNEDFVGIRSEWTMVDRIIASRVNDDTNEYLVKWKDLPYDECHWEQETDISAFQAEIERFNKFQSRTRKVLDASESENLQKEFLQYESSPGFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFESKVCPHLVIAPLSTLRNWEREFATWAPQMNVVMYFGSANARNLIREYEFYFPKNQKGFQGKKSKQLVGETRQGRIKFDVLLTSYEMINCDLSSLKPIKWECLIVDEGHRLKNKNSKLFSSLTQLSSKHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEGFQEEFKDINREEQILRLHKMLAPHLLRRLKKDVMTELPPKKELILRVELSSLQKEYYKAILTRNYPILIRRAGISLINVVMELRKLCCHPFMFDGLQPDLNINDEKAPIDYLLESCGKLQLLDKMMVKLKEQGHRVLIYSQFQKMLDLLGDYCCYRSWQFERIDGKVGGAERQVRIDRFNAEDSSRFCFLLSTRAGGLGINLTTADTVIIYDSDWNPHADLQAMARSHRHGQKKKVMIYRLIARGTIEERMIQMTKKKMVLEHLVVGRLQAENIKQEELDDLVRYGAEELFADENDEASKSRQIHYDDDAIDRLLDRDGDGGXDAGLDGEDEDGFLKAFKVANFEYIDEVKPAEEVAQKESEENQFSAANLKKSAYWDGLLKIGYEQGRIEELDALGKGKRTRTKWLGEGCSTWGDLSSDDENYSEDDSNSFETPTPARRGKKVRAENPGPLPLMEGQGKSLKVLGFSQNQRADFLQILMRFGVGDYDWKQFAPRMKHKSYEEITEYGILLLSHISEDITDSPTFTDGVPKEGLRIQDVLVRISLLIMISDKVKFVSENPGIQLFSSDVLIRYPRLKGTNFWKMEHDLVLLQAVLKHGYGRWHDIITDKDLQIQTVICQELNIAIADEAVQVQSDSRMLHGPNSTNGECSTSFNQSKQSDLCGSSDRGKQIQSHHESATRDQNKQIKRAHIEFIKRRLRLLEKGLIAEYQNERFSELKAQEEKKKLDEGNSTRVNVNKYIVKDTDELYYYLYDFDADRMQLLSLYNEMCQTVEGSAAGLAENATEQQQQKAIKNLGQIQSICADFYEILRYETPE* 1393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1628 1392 Pfam Helicase conserved C-terminal domain 695 808 IPR001650 -
Vra6g1628 1392 ProSiteProfiles Chromo and chromo shadow domain profile. 195 277 IPR000953 -
Vra6g1628 1392 Gene3D - 615 839 IPR027417 -
Vra6g1628 1392 Gene3D - 364 614 IPR038718 -
Vra6g1628 1392 CDD CD2_tandem 285 336 - -
Vra6g1628 1392 SMART DUF1087_2 928 997 IPR009463 -
Vra6g1628 1392 Gene3D - 281 336 - -
Vra6g1628 1392 MobiDBLite consensus disorder prediction 1213 1259 - -
Vra6g1628 1392 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 698 857 IPR001650 -
Vra6g1628 1392 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 607 868 IPR027417 -
Vra6g1628 1392 MobiDBLite consensus disorder prediction 1213 1245 - -
Vra6g1628 1392 MobiDBLite consensus disorder prediction 13 46 - -
Vra6g1628 1392 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 140 193 IPR013083 -
Vra6g1628 1392 SMART ultradead3 368 581 IPR014001 -
Vra6g1628 1392 Pfam Chromo (CHRromatin Organisation MOdifier) domain 288 336 IPR023780 -
Vra6g1628 1392 Pfam Chromo (CHRromatin Organisation MOdifier) domain 219 250 IPR023780 -
Vra6g1628 1392 PANTHER CHD3-TYPE CHROMATIN-REMODELING FACTOR PICKLE 118 1133 - -
Vra6g1628 1392 CDD SF2_C_SNF 693 819 - -
Vra6g1628 1392 CDD CD1_tandem 197 253 - -
Vra6g1628 1392 Pfam CHD subfamily II, DUF1087 930 980 IPR009463 -
Vra6g1628 1392 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 355 605 IPR027417 -
Vra6g1628 1392 Pfam SNF2-related domain 392 670 IPR000330 GO:0005524|GO:0140658
Vra6g1628 1392 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 118 1133 - -
Vra6g1628 1392 Gene3D - 1114 1290 - -
Vra6g1628 1392 Gene3D - 194 280 - -
Vra6g1628 1392 SUPERFAMILY Chromo domain-like 277 337 IPR016197 -
Vra6g1628 1392 ProSiteProfiles Zinc finger PHD-type profile. 146 193 IPR019787 -
Vra6g1628 1392 MobiDBLite consensus disorder prediction 994 1032 - -
Vra6g1628 1392 SMART chromo_7 285 339 IPR000953 -
Vra6g1628 1392 SMART chromo_7 194 257 IPR000953 -
Vra6g1628 1392 SMART PHD_3 148 191 IPR001965 -
Vra6g1628 1392 SMART DUF1086_2 995 1147 IPR009462 GO:0003677|GO:0006338
Vra6g1628 1392 MobiDBLite consensus disorder prediction 1 73 - -
Vra6g1628 1392 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 384 570 IPR014001 -
Vra6g1628 1392 SUPERFAMILY Chromo domain-like 161 250 IPR016197 -
Vra6g1628 1392 ProSiteProfiles Chromo and chromo shadow domain profile. 287 349 IPR000953 -
Vra6g1628 1392 SMART helicmild6 724 808 IPR001650 -
Vra6g1628 1392 Pfam CHD subfamily II, SANT-like domain 1017 1144 IPR009462 GO:0003677|GO:0006338
Vra6g1628 1392 ProSitePatterns Zinc finger PHD-type signature. 149 190 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1628 Vra-Chr6 32020028 32031242 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1628 394 852 RAD5 or RAD16-like Gene Family AT1G02670 26.103 5.28e-31 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vra6g1628 SNF2_N 5.4e-62 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1628 K11643 - gmx:100804203 1622.45