Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1627 ATGGCAAACTTCCACCGTAACAACGTCGAGAACGTGGTCCTTGGCCACCACCGTTCCAAGAGCACCTCCGTCGCCGGTGGCCACTTCCGCCTATGGCACTCCCTCTCCACCACCTCCTTCCGCCGCCTGGTCTTCAATGCCGTCAGCTGCGGCGCCAGCTCCCGGTACGCCGAGAGATCGGACACGTCCTCCGAGAGACACCACCACCAACCGAAACAACAGCACCGGCACAAGACGAAGCCGAATAACGCGAAGTCGGAGAAGCTCTCGGATCTGCTGAACCTGGCGGAGGTCGAAGCTGACGCGGAAACGAAGAAGAAAGAGGACAAACTCGAGGAGCTGAAGAGCCTAGTGAAGGAGCTTCATAAGGAAGATGAGGAAGAGAAAGAAGAAGAATCAATGACGCGGAGAAGAGAAGCTGCTTCGAAAGTGAGGTTGCTAGCCAAAGAGGATTTGGAAGTTAGAGGGACGCTCGCGATGCTTGGAGCTATTCCTCCTCTCGCCGCAATGCTCGATGAATCCAAAAACGACGTCGATTCGCTCGTTGCTTCTCTCTACGCGCTTCTCAACCTCGGAATCGGAAACGACGCGAATAAAGCAGCTATTGTGAAAGTTGGGTCAGTTGAGAAGATGCTGAAGCTGATTGAATCTCCAGATGGTCTAGATTCTTCGGTTTCTGAAGCAATTGTTGCGAATTTCCTTGGACTTAGTGCTTTGGATTCGAATAAGCCCATAATTGGGTCTTCGGCTTCAATTTCTTTTTTAGTTAGAACCCTTCAGAGTTTAGATGACAAGAGTAGTCCCCAAGCCAAGCAAGATGCTTTACGGGCATTGTACAATCTTTCGATCTACCCAGCCAATGTTGCATTCGTTTTGGAAACAGCTTTGGTTCTGTTTCTGGTGAATTCAATAGGGGACATGGAGGTAACTGAAAGAGCGCTTGCGATTCTCAGCAACTTGGTGTCGACCCGAGAGGGTAGAAAGGCGATTAGTGCAGTGCAAGATTCGATTCCGATCCTGGTGGATGTGTTGAATTGGACAGATTCGCCAGAATGCCAGGAGAAGGCGTCCTACATTTTGATGGTTATGGCACACAGGTCTTATGGGGACAAACAGGCCATGATTGAGGCAGGGATTGCGTCATCACTGCTTGAGTTGTCCCTTTTGGGTACCACATTGGCTCAGAAAAGGGCATCAAGGATACTAGAAATTTTGAGGGTAGACAAAGGGAAACAGATTTCTGGGAGCTATGGCTTGGGTGCTGCTGTCTCTGCCCCTATTAGCGGCTCTTCGTCCGCGAAGCCGGACGACGGAGGGAGGGAATGTTTTGACGAGGAGGAAGATATGATGAGTGAGGAGAAGAAAGCAGTGAAGCAACTAGTCCAACAGAGTTTGCAGAACAACATGAGGAAAATTGTGAAAAGGGCCAATTTGCCTCACGATATTGTGCCATCGGATCATTTTAAGTCACTCACCTCAAGTTCTACTTCAAAGAGCCTACCATTTTGA 1509 0.4977 MANFHRNNVENVVLGHHRSKSTSVAGGHFRLWHSLSTTSFRRLVFNAVSCGASSRYAERSDTSSERHHHQPKQQHRHKTKPNNAKSEKLSDLLNLAEVEADAETKKKEDKLEELKSLVKELHKEDEEEKEEESMTRRREAASKVRLLAKEDLEVRGTLAMLGAIPPLAAMLDESKNDVDSLVASLYALLNLGIGNDANKAAIVKVGSVEKMLKLIESPDGLDSSVSEAIVANFLGLSALDSNKPIIGSSASISFLVRTLQSLDDKSSPQAKQDALRALYNLSIYPANVAFVLETALVLFLVNSIGDMEVTERALAILSNLVSTREGRKAISAVQDSIPILVDVLNWTDSPECQEKASYILMVMAHRSYGDKQAMIEAGIASSLLELSLLGTTLAQKRASRILEILRVDKGKQISGSYGLGAAVSAPISGSSSAKPDDGGRECFDEEEDMMSEEKKAVKQLVQQSLQNNMRKIVKRANLPHDIVPSDHFKSLTSSSTSKSLPF* 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1627 502 Coils Coil 443 463 - -
Vra6g1627 502 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 162 206 IPR000225 GO:0005515
Vra6g1627 502 Gene3D - 113 260 IPR011989 -
Vra6g1627 502 Coils Coil 93 131 - -
Vra6g1627 502 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 1 502 - -
Vra6g1627 502 MobiDBLite consensus disorder prediction 487 502 - -
Vra6g1627 502 MobiDBLite consensus disorder prediction 122 141 - -
Vra6g1627 502 MobiDBLite consensus disorder prediction 482 502 - -
Vra6g1627 502 Gene3D - 261 415 IPR011989 -
Vra6g1627 502 MobiDBLite consensus disorder prediction 56 91 - -
Vra6g1627 502 PANTHER ARMADILLO/BETA-CATENIN-LIKE REPEAT PROTEIN 1 502 - -
Vra6g1627 502 SMART arm_5 239 283 IPR000225 GO:0005515
Vra6g1627 502 SMART arm_5 195 238 IPR000225 GO:0005515
Vra6g1627 502 SMART arm_5 326 365 IPR000225 GO:0005515
Vra6g1627 502 SMART arm_5 284 322 IPR000225 GO:0005515
Vra6g1627 502 SMART arm_5 151 193 IPR000225 GO:0005515
Vra6g1627 502 SUPERFAMILY ARM repeat 113 405 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1627 Vra-Chr6 31974148 31977565 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1627 130 409 U-box Gene Family AT1G67530 31.228 1.65e-30 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1627 - - gmx:100788575 702.205